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Updated: Dec 20, 2025

Assessing Somatic Hypermutation in Ramos B Cells after Overexpression or Knockdown of Specific Genes
Published on: November 1, 2011
Disease-associated CTNNBL1 mutation impairs somatic hypermutation by decreasing nuclear AID
Marcel Kuhny1, Lisa R Forbes2,3, Elif Çakan1
1Department of Immunobiology, Yale University School of Medicine, New Haven, Connecticut, USA.
Insights
A mutation in CTNNBL1 protein impairs somatic hypermutations (SHMs) in B cells, leading to immune deficiency. This study reveals CTNNBL1
Area of Science:
- Immunology
- Molecular Biology
- Genetics
Background:
- Common variable immunodeficiency associated with autoimmune cytopenia (CVID+AIC) is characterized by reduced isotype-switched B cells and somatic hypermutations (SHMs).
- The molecular basis for defective SHM in CVID+AIC remains largely unknown.
Purpose of the Study:
- To investigate the role of beta-catenin-like protein 1 (CTNNBL1) in the pathogenesis of CVID+AIC.
- To elucidate the molecular mechanism by which a CTNNBL1 mutation affects B cell function.
Main Methods:
- Identified a CVID+AIC patient with a homozygous M466V mutation in CTNNBL1.
- Assessed the interaction between CTNNBL1 and activation-induced cytidine deaminase (AID).
- Quantified SHM frequencies in patient-derived B cells and CRISPR/Cas9-engineered cell lines.
Main Results:
- The CTNNBL1 M466V mutation disrupted the binding of CTNNBL1 to AID.
- Reduced nuclear localization of AID was observed in patient B cells and engineered cells expressing the mutant CTNNBL1.
- Significantly lower SHM frequencies were detected in B cells from the patient and engineered cells compared to healthy controls.
Conclusions:
- CTNNBL1 is crucial for regulating AID-dependent antibody diversification in humans.
- The CTNNBL1 M466V mutation directly impairs SHM induction, contributing to CVID+AIC.
- Defective CTNNBL1-AID interaction underlies impaired B cell hypermutation in this CVID+AIC patient.
Abstract:
Patients with common variable immunodeficiency associated with autoimmune cytopenia (CVID+AIC) generate few isotype-switched B cells with severely decreased frequencies of somatic hypermutations (SHMs), but their underlying molecular defects remain poorly characterized. We identified a CVID+AIC patient who displays a rare homozygous missense M466V mutation in β-catenin-like protein 1 (CTNNBL1). Because CTNNBL1 binds activation-induced cytidine deaminase (AID) that catalyzes SHM, we tested AID interactions with the CTNNBL1 M466V variant. We found that the M466V mutation interfered with the association of CTNNBL1 with AID, resulting in decreased AID in the nuclei of patient EBV-transformed B cell lines and of CTNNBL1 466V/V Ramos B cells engineered to express only CTNNBL1 M466V using CRISPR/Cas9 technology. As a consequence, the scarce IgG+ memory B cells from the CTNNBL1 466V/V patient showed a low SHM frequency that averaged 6.7 mutations compared with about 18 mutations per clone in healthy-donor counterparts. In addition, CTNNBL1 466V/V Ramos B cells displayed a decreased incidence of SHM that was reduced by half compared with parental WT Ramos B cells, demonstrating that the CTNNBL1 M466V mutation is responsible for defective SHM induction. We conclude that CTNNBL1 plays an important role in regulating AID-dependent antibody diversification in humans.
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