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Updated: Oct 18, 2025

Single-cell Analysis of Immunophenotype and Cytokine Production in Peripheral Whole Blood via Mass Cytometry
Published on: June 26, 2018
Intracellular Cytokine Staining (ICS) on Human Lymphocytes or Peripheral Blood Mononuclear Cells (PBMCs)
Sheena Gupta1, Holden Maecker1
1Human Immune Monitoring Center, Stanford University, Stanford, USA; Institute for Immunity, Transplantation, and Infection, Stanford University, Stanford, USA.
Insights
Intracellular cytokine detection via flow cytometry is a powerful method for analyzing immune responses at the single-cell level. This technique offers significant advantages over traditional methods for studying cytokine production.
Area of Science:
- Immunology
- Cell Biology
- Biotechnology
Background:
- Cytokines are crucial signaling molecules in immune responses, regulating pathways like antiviral protein induction (IFN gamma), T cell proliferation (IL-2), and viral gene expression inhibition (TNF alpha).
- Cytokines are rapidly produced upon cellular activation, not pre-stored, making real-time detection essential for understanding immune dynamics.
Purpose of the Study:
- To highlight the significance of intracellular cytokine detection by flow cytometry as a premier technique for single-cell immune response analysis.
- To compare the advantages of intracellular cytokine staining with established methods like ELISPOT, limiting dilution, and T cell cloning.
Main Methods:
- Cells are stimulated with specific peptides or activation cocktails.
- Protein transport inhibitors (e.g., Brefeldin A) are used to retain intracellular cytokines.
- Cells are surface stained, fixed, permeabilized, and then stained with anti-cytokine antibodies for flow cytometric analysis.
Main Results:
- Intracellular cytokine staining allows for direct TH1/TH2 determination by detecting cytokine accumulation in the endoplasmic reticulum.
- The technique is highly versatile, enabling combined analysis with immunophenotyping or MHC multimers for antigen-specific responses.
- High-throughput flow cytometry instrumentation enhances the efficiency of single-cell cytokine analysis.
Conclusions:
- Intracellular cytokine staining is a flexible, high-throughput method superior to older techniques for single-cell cytokine analysis.
- This technique provides critical insights into immune responses by enabling detailed characterization of cytokine production at the individual cell level.
Abstract:
Production of cytokines plays an important role in the immune response. Cytokines are involved in many different pathways including the induction of many anti-viral proteins by IFN gamma, the induction of T cell proliferation by IL-2 and the inhibition of viral gene expression and replication by TNF alpha. Cytokines are not preformed factors but are rapidly produced and secreted in response to cellular activation. Intracellular cytokine detection by flow cytometry has emerged as the premier technique for studying cytokine production at the single-cell level. It detects the production and accumulation of cytokines within the endoplasmic reticulum after cell stimulation, allowing direct TH1 versus TH2 determination. It can also be used in combination with other flow cytometry protocols for immunophenotyping using cell surface markers or with MHC multimers to detect an antigen specific response, making it an extremely flexible and versatile method. This capability, combined with the high throughput nature of the instrumentation, gives intracellular cytokine staining an enormous advantage over existing single-cell techniques such as ELISPOT, limiting dilution, and T cell cloning. The principle steps of intracellular cytokine staining is as follows: Cells are activated for a few hours using either a specific peptide or a non-specific activation cocktail; An inhibitor of protein transport (e.g. Brefeldin A) is added to retain the cytokines within the cell; Next, EDTA is added to remove adherent cells from the activation vessel;After washing, antibodies to cell surface markers can be added to the cells;The cells are then fixed in paraformaldehyde and permeabilized;The anti-cytokine antibody is added and the cells can be analyzed by flow cytometer.
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