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関連する概念動画

Biosynthesis of Polysaccharides01:26

Biosynthesis of Polysaccharides

855
Polysaccharides such as glycogen and starch are synthesized from nucleoside diphosphate sugars, primarily uridine diphosphate glucose (UDPG) and adenosine diphosphate glucose (ADPG). These activated glucose donors act as key intermediates in carbohydrate metabolism and biosynthesis. UDPG primarily involves glycogen synthesis in animals and many bacteria, while ADPG plays a fundamental role in starch synthesis in plants and certain bacteria.UDPG is formed when glucose-1-phosphate reacts with...
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Biosynthesis of Nucleic Acids01:28

Biosynthesis of Nucleic Acids

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Nucleic acid biosynthesis is a fundamental biochemical process that produces the purine and pyrimidine nucleotides essential for DNA and RNA synthesis. This pathway maintains a balanced nucleotide pool, preventing imbalances that could jeopardize genetic integrity and cellular function. Given the crucial role of nucleotides, their synthesis is tightly regulated to ensure proper cellular homeostasis.Purine BiosynthesisThe biosynthesis of purine nucleotides begins with ribose-5-phosphate, a...
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Glycolysis: Preparatory Phase01:21

Glycolysis: Preparatory Phase

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In cellular metabolism (the complete breakdown of glucose to extract energy),  glycolysis is the first step. Glycolysis takes place in the cytoplasm of both prokaryotic and eukaryotic cells. Glucose enters heterotrophic cells in two ways. One method is through secondary active transport, where the transport takes place against the glucose concentration gradient. The other mechanism uses a group of integral proteins called GLUT proteins, also known as glucose transporter proteins. These...
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Other Glycolytic Pathways01:24

Other Glycolytic Pathways

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The pentose phosphate pathway (PPP) operates in parallel with glycolysis, facilitating the metabolism of both pentoses and glucose. This pathway consists of two distinct phases: the oxidative and non-oxidative phases. While it does not directly generate ATP, the intermediates formed during the process can integrate into glycolysis, contributing to cellular energy metabolism when required.Oxidative Phase: NADPH ProductionThe oxidative phase of the pentose phosphate pathway is primarily...
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Urea Cycle01:23

Urea Cycle

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The urea cycle describes how liver cells convert ammonia to urea. Ammonia is a toxic waste product of protein catabolism. Land animals must convert ammonia into the less toxic urea which can be safely eliminated by the kidneys through urine. Marine animals excrete ammonia directly, and the surrounding water dilutes the ammonia to safe levels.
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Allosteric Proteins-ATCase01:19

Allosteric Proteins-ATCase

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Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to  N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
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Regioselective O-Glycosylation of Nucleosides via the Temporary 2',3'-Diol Protection by a Boronic Ester for the Synthesis of Disaccharide Nucleosides
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Regioselective O-Glycosylation of Nucleosides via the Temporary 2',3'-Diol Protection by a Boronic Ester for the Synthesis of Disaccharide Nucleosides

Published on: July 26, 2018

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偽ウリジン合成体は,グリカル中間体を通過する.

Govardhan Reddy Veerareddygari1, Sanjay K Singh1, Eugene G Mueller1

  • 1Department of Chemistry, University of Louisville , Louisville, Kentucky 40205, United States.

Journal of the American Chemical Society
|June 14, 2016
PubMed
まとめ

偽ウリジン合成酵素は,ウリジン (U) を偽ウリジン (Ψ) に変換する. このメカニズムは,C2

科学分野:

  • 生物化学
  • 分子生物学
  • 酵素学

背景:

  • 偽ウリジン合成酵素は,RNAにおけるウリジン (U) から偽ウリジン (Ψ) へのイソメリゼーションを触媒化する.
  • これらの酵素の正確な触媒メカニズムは,分子生物学において長年の疑問となっている.

研究 の 目的:

  • 偽ウリジン合成によって用いられる反応機構を明らかにする.
  • プセウドウリジン形成におけるグリカル中間物の潜在的な役割を調査する.

主な方法:

  • 5-フッ素ウリジンの探知分子を用いたメカニズム研究.
  • C2'位置でデュテラートされた基板を用いた運動同位体効果分析.

主要な成果:

  • 証拠は,C2'位置でのデプロトネーションによって形成されたグリカル中間物質を示唆しています.
  • 尿素のC2'が二酸化されたとき,主動性同位体効果が観察された.
  • この観測は,C2'での脱プロトネーションを,同化過程の重要なステップとして確認する.

結論:

  • 発見は,偽ウリジン合成のメカニズムを確立します.

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Metabolic Pathway Confirmation and Discovery Through 13C-labeling of Proteinogenic Amino Acids
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Metabolic Pathway Confirmation and Discovery Through 13C-labeling of Proteinogenic Amino Acids

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  • 反応はC2'での脱プロトン化を経て,グリカル中間物質を形成し,その後,偽ウリジンへの異体化が行われます.