Retinoic acid induces human gastruloids with posterior embryo-like structures

Affiliations
  • 1Department of Genome Sciences, University of Washington, Seattle, WA, USA. hamazaki@uw.edu.
  • 2Department of Obstetrics & Gynecology, University of Washington, Seattle, WA, USA. hamazaki@uw.edu.
  • 3Institute for Stem Cell & Regenerative Medicine, University of Washington, Seattle, WA, USA. hamazaki@uw.edu.
  • 4Brotman Baty Institute for Precision Medicine, Seattle, WA, USA. hamazaki@uw.edu.
  • 5Seattle Hub for Synthetic Biology, Seattle, WA, USA. hamazaki@uw.edu.
  • 6Department of Genome Sciences, University of Washington, Seattle, WA, USA.
  • 7Seattle Hub for Synthetic Biology, Seattle, WA, USA.
  • 8Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.
  • 9Medical Scientist Training Program, University of Washington, Seattle, WA, USA.
  • 10Department of Bioengineering, University of Washington, Seattle, WA, USA.
  • 11Fred Hutchinson Cancer Center, Seattle, WA, USA.
  • 12Department of Genome Sciences, University of Washington, Seattle, WA, USA. shendure@uw.edu.
  • 13Institute for Stem Cell & Regenerative Medicine, University of Washington, Seattle, WA, USA. shendure@uw.edu.
  • 14Brotman Baty Institute for Precision Medicine, Seattle, WA, USA. shendure@uw.edu.
  • 15Seattle Hub for Synthetic Biology, Seattle, WA, USA. shendure@uw.edu.
  • 16Howard Hughes Medical Institute, Seattle, WA, USA. shendure@uw.edu.
  • 17Allen Discovery Center for Cell Lineage Tracing, Seattle, WA, USA. shendure@uw.edu.

Published on:

Abstract

Gastruloids are a powerful in vitro model of early human development. However, although elongated and composed of all three germ layers, human gastruloids do not morphologically resemble post-implantation human embryos. Here we show that an early pulse of retinoic acid (RA), together with later Matrigel, robustly induces human gastruloids with posterior embryo-like morphological structures, including a neural tube flanked by segmented somites and diverse cell types, including neural crest, neural progenitors, renal progenitors and myocytes. Through in silico staging based on single-cell RNA sequencing, we find that human RA-gastruloids progress further than other human or mouse embryo models, aligning to E9.5 mouse and CS11 cynomolgus monkey embryos. We leverage chemical and genetic perturbations of RA-gastruloids to confirm that WNT and BMP signalling regulate somite formation and neural tube length in the human context, while transcription factors TBX6 and PAX3 underpin presomitic mesoderm and neural crest, respectively. Looking forward, RA-gastruloids are a robust, scalable model for decoding early human embryogenesis.