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相关概念视频

Predicting Molecular Geometry02:27

Predicting Molecular Geometry

VSEPR Theory for Determination of Electron Pair Geometries
Hybridization of Atomic Orbitals I03:24

Hybridization of Atomic Orbitals I

The mathematical expression known as the wave function, ψ, contains information about each orbital and the wavelike properties of electrons in an isolated atom. When atoms are bound together in a molecule, the wave functions combine to produce new mathematical descriptions that have different shapes. This process of combining the wave functions for atomic orbitals is called hybridization and is mathematically accomplished by the linear combination of atomic orbitals. The new orbitals that...
Valence Bond Theory02:42

Valence Bond Theory

Coordination compounds and complexes exhibit different colors, geometries, and magnetic behavior, depending on the metal atom/ion and ligands from which they are composed. In an attempt to explain the bonding and structure of coordination complexes, Linus Pauling proposed the valence bond theory, or VBT, using the concepts of hybridization and the overlapping of the atomic orbitals. According to VBT, the central metal atom or ion (Lewis acid) hybridizes to provide empty orbitals of suitable...
Newman Projections02:06

Newman Projections

Different notations are used to represent the three-dimensional structure of molecules on two-dimensional surfaces. One of the most commonly used representations is the dash-wedge formula. The dashed wedges, solid wedges, and the plane lines indicate the groups situated behind the plane, coming out of the plane, and in the plane, respectively.
The organic molecules rotate across the single bonds leading to numerous temporary three-dimensional structures of varying energy known as conformers.
¹H NMR: Complex Splitting01:13

¹H NMR: Complex Splitting

A proton M that is coupled to a proton X results in doublet signals for M. However, NMR-active nuclei can be simultaneously coupled to more than one nonequivalent nucleus. When M is coupled to a second proton A, such as in styrene oxide, each peak in the doublet is split into another doublet.
Splitting diagrams or splitting tree diagrams are routinely used to depict such complex couplings. While drawing splitting diagrams, the splitting with the larger coupling constant is usually applied first.
2D NMR: Heteronuclear Single-Quantum Correlation Spectroscopy (HSQC)01:19

2D NMR: Heteronuclear Single-Quantum Correlation Spectroscopy (HSQC)

Heteronuclear single-quantum correlation spectroscopy (HSQC) is a 2D NMR technique that reveals one-bond correlations between hydrogen and a heteronucleus. The HSQC experiment is similar to the heteronuclear correlation experiment (HETCOR) but is more sensitive. In the HSQC spectrum, the proton chemical shift is plotted on the horizontal F2 axis, while the 13C chemical shift is plotted on the vertical F1 axis. The corresponding proton and 13C spectra are also shown. The HSQC contour plot does...

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相关实验视频

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Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy
14:55

Atomic Scale Structural Studies of Macromolecular Assemblies by Solid-state Nuclear Magnetic Resonance Spectroscopy

Published on: September 17, 2017

用于确定宏分子晶体结构的双胺结合标签.

Nicholas R Silvaggi1, Langdon J Martin, Harald Schwalbe

  • 1Department of Physiology and Biophysics, Boston University School of Medicine, 715 Albany Street, Boston, Massachusetts 02118, USA.

Journal of the American Chemical Society
|May 15, 2007
PubMed
概括

一种新型的双兰他尼德结合标签 (dLBT) 简化了使用X射线晶体学来确定蛋白质结构. 这种方法避免了复杂的修改,使得像ubiquitin这样的蛋白质更容易分阶段和建模.

科学领域:

  • 结构生物学 结构生物学
  • 生物物理学的生物物理.
  • 晶体学 晶体学是指结晶学.

背景情况:

  • 蛋白质结构的确定对于理解生物功能至关重要.
  • 宏分子分相仍然是X射线晶体学的一个瓶.
  • 目前的方法通常需要蛋白质衍生或非自然氨基酸.

研究的目的:

  • 引入一种用于X射线晶体学分相的新标签.
  • 为了证明双胺结合标签 (dLBT) 对单波长异常衍射 (SAD) 的实用性.
  • 为了促进蛋白质的结构确定,如ubiquitin.

主要方法:

  • 设计了一种用于高 afinity lanthanide 结合的双 lanthanide 结合标签 (dLBT).
  • 创建了dLBT与ubiquitin的N端融合结构.
  • 使用单波长异常衍射 (SAD) 与Tb3+离子进行相位.
  • 采用自动化模型构建软件来完成结构.

主要成果:

  • 通过使用dLBT结合的Tb3+离子成功确定了乌比奎丁的相位信息.
  • 获得了清晰的电子密度图,分辨率为2.6 Å.

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  • 自动化模型构建成功构建了大约75%的ubiquitin结构.
  • 消除了对非自然氨基酸或化学修饰的需求.
  • 结论:

    • 该dLBT是宏分子分相的多功能工具,补充现有方法.
    • 这种技术简化了X射线结构的确定,特别是当蛋白质衍生具有挑战性时.
    • 该dLBT提供了一个广泛适用的分阶段解决方案,可能减少对同步机设施的依赖.