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RNA Stability01:53

RNA Stability

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Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
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Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
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RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
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PIWI-interacting RNAs, or piRNAs, are the most abundant short non-coding RNAs. More than 20,000 genes have been found in humans that code for piRNAs while only 2000 genes have been found for miRNAs. piRNAs can act at the transcriptional and post-transcriptional levels and have a vital role in silencing transposable elements present in germ cells. They are also involved in epigenetic silencing and activation. Previously, they were thought to function only in germ cells but new evidence suggests...
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The term ribozyme is used for RNA that can act as an enzyme. Ribozymes are mainly found in selected viruses, bacteria, plant organelles, and lower eukaryotes. Ribozymes were first discovered in 1982 when Tom Cech’s laboratory observed Group I introns acting as enzymes. This was shortly followed by the discovery of another ribozyme, Ribonulcease P, by Sid Altman’s laboratory. Both Cech and Altman received the Nobel Prize in chemistry in 1989 for their work on ribozymes.
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RNA Isolation of Pseudomonas aeruginosa Colonizing the Murine Gastrointestinal Tract
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没有RNase P的生命

Lennart Randau1, Imke Schröder, Dieter Söll

  • 1Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520-8114, USA.

Nature
|May 3, 2008
PubMed
概括

考古物Nanoarchaeum equitans缺乏核糖核酶P (RNase P),这对于转移RNA (tRNA) 成熟至关重要. 相反,它使用独特的tRNA基因促进器放置来产生无领导的tRNA,绕过对RNase P.的需求.

科学领域:

  • 分子生物学分子生物学
  • 基因组学就是基因组学.
  • 生物化学 生物化学

背景情况:

  • 核糖酶P (RNase P) 是一种普遍保存的核糖蛋白酶,对于转移RNA (tRNA) 5'端成熟至关重要.
  • 考古物Nanoarchaeum equitans呈现出一种异常,因为标准的基因组和生物化学分析未能识别出一个功能性的RNase P酶.

研究的目的:

  • 在没有正规RNase P的情况下,研究Nanoarchaeum equitans中tRNA 5'成熟的机制.
  • 了解这个生物体如何实现tRNA处理,尽管明显失去一种通用酶.

主要方法:

  • 对Nanoarchaeum equitans基因组进行计算分析.
  • 使用细胞提取物进行生物化学测试.
  • 对tRNA5'终端和前体结构的分析.
  • 验证已加工的tRNA的氨基化.

主要成果:

  • 在Nanoarchaeum equitans的基因组中,缺乏可识别的RNase P基因.
  • 保存的tRNA基因促进位使得无领导的tRNAs的合成成为可能.
  • 成熟的tRNA物种被确定为5'三酸末端,表明处理独立于RNase P.

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  • 转录tRNA的启动需要纯素,而具有5'细胞因子的tRNA表现出扩展的5'末端与额外的纯素.
  • 这些修改后的tRNA是氨基酸-tRNA合成酶的功能基质.
  • 结论:

    • 纳米archaeum equitans已经发展出一种用于tRNA 5'成熟的替代策略,规避了对RNase P.的需求.
    • 对tRNA基因和促进元素的基因组重组允许产生功能性,无领导的tRNA.
    • 这种适应突显了大自然在基因组凝结等进化压力下克服古老的必需酶损失的能力.