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相关概念视频

RNA-seq03:21

RNA-seq

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RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
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In-situ Hybridization02:31

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In situ hybridization (ISH) is a technique used to detect and localize specific DNA or RNA molecules in cells, tissue, or tissue sections using a labeled probe. The technique was first used in 1969 for the investigation of nucleic acids. It is currently an essential tool in scientific research and clinical settings, especially for diagnostic purposes.
Types of probes and labels
A probe is a complementary strand of DNA or RNA that binds to corresponding nucleotide sequences in a cell. Many...
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Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
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相关实验视频

Updated: May 2, 2026

Visualizing Genetic Variants, Short Targets, and Point Mutations in the Morphological Tissue Context with an RNA In Situ Hybridization Assay
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高度多重化的细胞下RNA序列化 in situ.

Je Hyuk Lee1, Evan R Daugharthy, Jonathan Scheiman

  • 1Wyss Institute, Harvard Medical School, Boston, MA 02115, USA.

Science (New York, N.Y.)
|March 1, 2014
PubMed
概括

光在位RNA测序 (FISSEQ) 允许研究人员绘制基因表达和细胞内的RNA定位图. 这种方法增强了单分子检测,用于在现场研究细胞过程.

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科学领域:

  • 分子生物学分子生物学
  • 基因组学就是基因组学.
  • 细胞生物学 细胞生物学

背景情况:

  • 了解空间基因表达需要精确的RNA在细胞内的定位.
  • 目前的方法在单分子检测的光学分辨率和信号噪声方面存在局限性.

研究的目的:

  • 引入光在位RNA测序 (FISSEQ) 用于高分辨率的空间转录学.
  • 为了证明FISSEQ在分析RNA表达和局部化的能力.

主要方法:

  • 开发了FISSEQ,一种涉及交叉链接互补DNA (cDNA) amplicons的现场测序的方法.
  • 使用模拟伤口愈合试验,将FISSEQ应用于人类初级纤维细胞.
  • 在现场生成了30个基因对8102个基因的读数.

主要成果:

  • 成功地绘制了人类纤维细胞中的RNA表达和局部化.
  • FISSEQ证明了与组织切片和整体胚胎的兼容性.
  • 在单分子检测中减少光学分辨率和噪声信号的限制.

结论:

  • FISSEQ提供了一个强大的平台,可以在现场大规模并行检测遗传元素.
  • 能够研究细胞表型,基因调节和细胞环境.
  • 在单核酸分辨率上研究基因表达的空间组织.