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Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

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Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

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Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
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Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

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Allosteric Regulation01:08

Allosteric Regulation

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Allosteric regulation of enzymes occurs when the binding of an effector molecule to a site that is different from the active site causes a change in the enzymatic activity. This alternate site is called an allosteric site, and an enzyme can contain more than one of these sites. Allosteric regulation can either be positive or negative, resulting in an increase or decrease in enzyme activity. Most enzymes that display allosteric regulation are metabolic enzymes involved in the degradation or...
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Allosteric Regulation01:08

Allosteric Regulation

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Allosteric Proteins-ATCase01:19

Allosteric Proteins-ATCase

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Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to  N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
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相关实验视频

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Visualizing Protein Kinase A Activity In Head-fixed Behaving Mice Using In Vivo Two-photon Fluorescence Lifetime Imaging Microscopy
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计算的pKa变化暴露动态的通讯网络

Eric J M Lang, Logan C Heyes, Geoffrey B Jameson1

  • 1Institute of Fundamental Sciences, Massey University , PO Box 11-222, Palmerston North 4422, New Zealand.

Journal of the American Chemical Society
|January 23, 2016
PubMed
概括

我们开发了一种跟踪蛋白质pKa变化的新方法, 这种方法确定了酶调节中的关键残留物,并经过实验验证.

科学领域:

  • 生物化学和分子生物学
  • 蛋白质动力学和学

背景情况:

  • 体调节对代谢途径至关重要,但信号传输的机制,特别是在没有重大构造变化的动态系统中,理解得很差.
  • 识别动态的全沟通网络对于理解酶调节至关重要.

研究的目的:

  • 通过监测电离残留物的pKa变化,开发和验证一种用于识别动态体通信网络的新方法.
  • 研究Neisseria meningitidis 3-deoxy-d-arabino-heptulosonate 7-phosphate合成酶的微妙动态调节机制.

主要方法:

  • 使用分子动力学模拟来监测可离子化残留物的pKa变化.
  • 分析了库伦互动,结,溶解和蛋白质运动的变化,作为全信号传输的指标.
  • 将该方法应用于Neisseria meningitidis 3-deoxy-d-arabino-heptulosonate 7-phosphate合成酶,并通过pH调节和突变发生验证结果.

主要成果:

  • 成功确定了关键的通讯途径,将全结合部位与酶的活性部位联系起来.
  • 证明 pKa 变化是表效应因子诱导变化的敏感度量,反映了复杂的环境和动态因素.
  • 通过通过pH调节恢复催化活性而未影响全调节剂结合,实验验证实了确定的途径.

结论:

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  • 通过pKa变异监测方法,可以有效地发现蛋白质中的动态基通讯网络.
  • 这种方法提供了可测试的预测,用于电离残留在异质调节中的作用.
  • 了解这些通路对于解读酶功能和代谢控制至关重要.