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相关概念视频

Nucleosome Remodeling02:54

Nucleosome Remodeling

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Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
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Inheritance of Chromatin Structures03:17

Inheritance of Chromatin Structures

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Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
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The Nucleosome Core Particle01:12

The Nucleosome Core Particle

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Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
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The Nucleosome Core Particle02:10

The Nucleosome Core Particle

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Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
The paradox
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their main responsibility is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. While on the other hand, they must allow polymerase enzymes to access DNA...
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Transcription Elongation Factors02:35

Transcription Elongation Factors

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Transcription elongation is a dynamic process that alters depending upon the sequence heterogeneity of the DNA being transcribed. Hence, it is not surprising that the elongation complex's composition also varies along the way while transcribing a gene.
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
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Transcription Elongation Factors02:35

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An Optimized Protocol for Electrophoretic Mobility Shift Assay Using Infrared Fluorescent Dye-labeled Oligonucleotides
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核结合的SOX2和SOX11结构阐明了先驱因子的功能

Svetlana O Dodonova1, Fangjie Zhu2, Christian Dienemann1

  • 1Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.

Nature
|May 1, 2020
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概括

像SOX2这样的先驱转录因子结合于核体DNA, 扭曲它以开放色素. 这促进了基因表达,对干细胞多能性和分化至关重要.

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科学领域:

  • 分子生物学
  • 表观遗传学
  • 结构生物学

背景情况:

  • 开拓性转录因子对于包括多能性,分化和重编程在内的细胞过程至关重要.
  • 这些因素可以在密集的染色体内访问和调节基因.
  • SOX2是胚胎干细胞多能性和自我更新的关键先驱因素.

研究的目的:

  • 阐明SOX2和SOX11先驱转录因子与核细胞相互作用的结构机制.
  • 了解这些因素如何促进基因调节的染色质可访问性.

主要方法:

  • 使用冷电子显微镜确定了SOX2和SOX11与核细胞结合的DNA结合域的结构.
  • 分析的重点是SOX因子结合引起的分子相互作用和构造变化.

主要成果:

  • SOX因子结合于核体上的超螺旋位置2,导致局部DNA扭曲.
  • 结合方便了DNA末端与基因组八度体的分离,提高了DNA的可访问性.
  • SOX结合可以重新定位基因组H4的N终端尾部,可能会破坏更高层次的核酶堆叠.

结论:

  • 开拓性转录因子利用结合能量启动色素开放.
  • 这一过程涉及核体重塑,并促进后续的基因转录.
  • 这些发现提供了关于先驱因子如何克服染色体障碍以调节基因表达的结构见解.