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Carbocations02:10

Carbocations

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Carbocations are one of the reaction intermediates formed during several nucleophilic substitutions or elimination reactions. A carbocation is an electron-deficient species with the central carbon atom having six electrons and three bonded atoms. The central carbon in a carbocation is sp2 hybridized with trigonal planar geometry. It has an empty p orbital perpendicular to the plane of the structure that can accept electrons. Thus, carbocations act as strong electrophiles and may react with any...
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Enolate Mechanism Conventions01:15

Enolate Mechanism Conventions

2.3K
When a carbonyl compound is treated with a strong base, the α position gets deprotonated to give a resonance-stabilized intermediate called an enolate. Enolates are ambident nucleophiles because they possess two nucleophilic sites that can attack an electrophile owing to the delocalization of the negative charge between the α carbon and oxygen atoms. When the oxygen atom attacks an electrophile, it is called O-attack, whereas electrophilic attack via the α carbon is known as...
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Nucleophilic Addition to the Carbonyl Group: General Mechanism01:18

Nucleophilic Addition to the Carbonyl Group: General Mechanism

5.7K
The carbonyl carbon in an aldehyde or ketone is the site of a nucleophilic attack due to its electron-deficient nature. Depending on the strength of the incoming nucleophile, the reaction occurs via different mechanistic pathways.
A stronger nucleophile can directly attack the electrophilic center, the carbonyl carbon. The HOMO orbital of the nucleophile interacts with the LUMO (π* antibonding) orbital present on the carbonyl carbon. This interaction breaks the π bond and shifts the...
5.7K
Energy Diagrams, Transition States, and Intermediates02:13

Energy Diagrams, Transition States, and Intermediates

16.9K
Free-energy diagrams, or reaction coordinate diagrams, are graphs showing the energy changes that occur during a chemical reaction. The reaction coordinate represented on the horizontal axis shows how far the reaction has progressed structurally. Positions along the x-axis close to the reactants have structures resembling the reactants, while positions close to the products resemble the products.  Peaks on the energy diagram represent stable structures with measurable lifetimes, while...
16.9K
Gene Families01:57

Gene Families

8.9K
Gene families consist of groups of genes proposed to have originated from a common ancestor. Typically these arise through events in which a gene or genes are mistakenly duplicated during cell division. Unlike their parent genes (which are subject to selection pressure to maintain function), these gene copies do not need to preserve their sequences and may evolve at a relatively faster rate.
Occasionally these regions can be adapted to take on new roles within the organism, becoming novel genes...
8.9K
Reactivity of Enols01:18

Reactivity of Enols

3.3K
Enols are a class of compounds where a hydroxyl group is attached to a carbon–carbon double bond, which implies that it is a vinyl alcohol. A carbonyl compound with an α hydrogen undergoes keto–enol tautomerism and remains in equilibrium with its tautomer, the enol form. Usually, the keto tautomer is present in a higher concentration than the enol tautomer due to the higher bond energy of C=O compared to C=C. Moreover, the direction of the keto–enol equilibrium is...
3.3K

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Updated: Aug 6, 2025

Isolating Free Carbenes, their Mixed Dimers and Organic Radicals
10:44

Isolating Free Carbenes, their Mixed Dimers and Organic Radicals

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蛋白质蛋白反应性碳酸中间体的微ED结构

Emma Danelius1,2, Nicholas J Porter3, Johan Unge1

  • 1Department of Biological Chemistry, University of California, Los Angeles, 615 Charles E. Young Drive South, Los Angeles, California 90095, United States.

Journal of the American Chemical Society
|March 22, 2023
PubMed
概括

通过微晶电子衍射 (MicroED) 确定了Aeropyrum pernix原蛋白变体的结构. 这一突破使得以前无法实现的蛋白质结构的详细研究成为可能.

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科学领域:

  • 结构生物学
  • 生物化学
  • 晶体学

背景情况:

  • 微晶电子衍射 (MicroED) 是一种用于确定分子结构的强大技术.
  • 虽然MicroED对小分子和具有成功,但对新型蛋白质结构的应用有限.
  • 在微型发电技术和蛋白质结构预测方面的进步正在扩大其能力.

研究的目的:

  • 通过使用MicroED来确定工程化Aeropyrum pernix原蛋白 (ApePgb) 的结构.
  • 使用AlphaFold2模型进行MicroED结构确定.
  • 研究ApePgb变体中增强的碳转移活性的结构基础.

主要方法:

  • 微晶电子衍射 (MicroED) 使用先进技术 (更高电压,低噪声探测器).
  • 使用AlphaFold2模型进行分阶段.
  • 对ApePgb变体及其中间体进行晶体学和结构分析.

主要成果:

  • 确定了Aeropyrum pernix原蛋白 (ApePgb) 变体的第一个微ED结构.
  • 发现突变将阿尔法螺旋转化为一个动态循环,
  • 在工程化碳转移活动中捕获和表征反应性铁碳化合物中间体.

结论:

  • 改进的MicroED技术和蛋白质结构预测模型可以研究以前无法访问的蛋白质结构.
  • 确定的结构提供了突变如何增强碳转移活性的见解.
  • 这些发现突显了MicroED在研究复杂的生物分子及其机制方面的潜力.