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相关概念视频

RNA Structure01:19

RNA Structure

5.0K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
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The Replisome03:01

The Replisome

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DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with...
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Bacterial RNA Polymerase00:43

Bacterial RNA Polymerase

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Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
29.8K
Eukaryotic RNA Polymerases00:58

Eukaryotic RNA Polymerases

24.4K
RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
24.4K
Nucleic Acid Structure01:25

Nucleic Acid Structure

6.2K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
6.2K
Transcription Initiation01:47

Transcription Initiation

16.5K
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
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相关实验视频

Updated: Jul 28, 2025

Chemical Triphosphorylation of Oligonucleotides
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Chemical Triphosphorylation of Oligonucleotides

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RNA聚合酶 ribozyme 通过三级相互作用识别模板-原始体复合体

Ankana Kakoti1, Gerald F Joyce1

  • 1The Salk Institute, 10010 North Torrey Pines Road, La Jolla, California 92037, United States.

Biochemistry
|May 31, 2023
PubMed
概括
此摘要是机器生成的。

这项研究设计了一种RNA聚合酶 ribozyme,用于高效的RNA合成. 它利用三级相互作用来识别RNA模板和原始物的总序,从而实现不受约束的遗传信息传输.

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Artificial RNA Polymerase II Elongation Complexes for Dissecting Co-transcriptional RNA Processing Events
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DNA Sequence Recognition by DNA Primase Using High-Throughput Primase Profiling
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DNA Sequence Recognition by DNA Primase Using High-Throughput Primase Profiling

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相关实验视频

Last Updated: Jul 28, 2025

Chemical Triphosphorylation of Oligonucleotides
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Chemical Triphosphorylation of Oligonucleotides

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Artificial RNA Polymerase II Elongation Complexes for Dissecting Co-transcriptional RNA Processing Events
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科学领域:

  • 生物化学 生物化学
  • 分子生物学分子生物学
  • 生命的起源研究 生命的起源研究

背景情况:

  • RNA酶 (核糖酶) 通常需要特定的基配对来参与基质,从而限制了它们的序列通用性.
  • 定向进化已被用来优化核酶,以提高效率和更广泛的基质识别.

研究的目的:

  • 通过三级相互作用对优化序列一般RNA合成的RNA聚合酶利博酶进行表征.
  • 了解这种 ribozyme 的增强功能的运动性质和结构基础.

主要方法:

  • 一个RNA聚合酶 ribozyme 的定向进化.
  • 使用迈凯利斯-门动力学的动力学分析.
  • 紫外线交叉链接研究,以绘制活性位点相互作用的地图.

主要成果:

  • 优化的核糖酶通过第三级相互作用识别RNA模板,原始酶和核酸三酸盐 (NTP),独立于模板序列.
  • 核酶表现出迈凯利斯-门的和动力学,其催化速率为0.11分钟-1和0.11微米的Km.
  • 由定向进化驱动的催化中心的结构重组使和基质结合成为可能.

结论:

  • 工程RNA聚合酶 ribozyme通过三级相互作用证明了序列一般RNA聚合,模仿蛋白质聚合酶.
  • 这一进步对于理解遗传信息不受约束的传播至关重要,并对生命起源产生影响.