遗传变异和功能:揭示与微生物表型相关的潜在因素
Xiaolin Liu1,2, Yue Ma1,2, Jun Wang1,2
1CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.
Biophysics reports
|June 8, 2023
概括
本综述探讨了微生物和宿主中的遗传变异如何影响表型. 它强调了分析微生物功能,耐药性和宿主微生物相互作用的进展,为未来的研究铺平了道路.
科学领域:
- 微生物学 微生物学
- 基因组学就是基因组学.
- 生物信息学是一种生物信息学.
背景情况:
- 测序技术的进步产生了大量的微生物和宿主基因组数据.
- 遗传变异越来越多地与表型相关,提高了对微生物功能的理解.
研究的目的:
- 审查协会分析在像Mycobacterium结核病这样的微生物中的应用.
- 总结与微生物表型和微生物组特征相关的宿主遗传因素.
- 讨论微生物和微生物组的基因功能分析中的挑战和解决方案.
主要方法:
- 对微生物遗传变体和表型 (如耐药性) 的关联分析.
- 鉴定微生物遗传因素的比较基因组和转录基因组方法.
- 对与微生物表型和微生物组合相关的宿主遗传变异的分析.
主要成果:
- 检查与耐药性,病变和药物标相关的微生物遗传变异.
- 确定影响易感性,微生物负载和微生物组特征的宿主遗传因素.
- 关于影响微生物表型的宿主遗传变异的最新发现的摘要.
结论:
- 微生物和微生物组中的基因功能分析是一个具有重大潜力的新兴领域.
- 了解历史,现状和挑战对于推动这一领域的发展至关重要.
- 未来的研究应该专注于克服现有的障碍,以充分实现基因功能分析的潜力.
相关概念视频
Background and Environment Affect Phenotype
6.6K
Although the genetic makeup of an organism plays a major role in determining the phenotype, there are also several environmental factors, such as temperature, oxygen availability, presence of mutagens, that can alter an organism’s phenotype.
An example of how genetic background affects phenotype can be seen in horses. The Extension gene in horses is responsible for their coat color. A wild-type gene (EE) produces black pigment in the coat, while a mutant gene (ee) produces red pigment. A...
An example of how genetic background affects phenotype can be seen in horses. The Extension gene in horses is responsible for their coat color. A wild-type gene (EE) produces black pigment in the coat, while a mutant gene (ee) produces red pigment. A...
6.6K
Mutations in Microorganisms
36
Mutations are heritable changes in an organism’s genome involving alterations in the base sequence of DNA or RNA. These changes can influence cellular processes and phenotypic traits, potentially transforming the unaltered wild type into a mutant form. Such changes, termed forward mutations, are pivotal in shaping the genetic diversity of organisms.RNA viruses exhibit the highest mutation rates due to the absence of robust proofreading mechanisms during genome replication. In contrast,...
36
Genetic Variation
332
Genetic variation is the diversity in DNA sequences found among individuals of the same species. This diversity is crucial for a species' survival because it helps organisms adapt to environmental changes. Genetic variation begins with fertilization, where an egg and sperm cell merge. Each of these cells carries 23 chromosomes, up to 46 in the fertilized egg. Chromosomes are long DNA strands that contain genes, the basic units of heredity.
Genes exist in different versions called alleles,...
Genes exist in different versions called alleles,...
332
Modern Molecular Taxonomy
56
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
56
Gene-Environment Interactions
376
Gene expression is a dynamic process that is significantly influenced by environmental factors. This interaction underlies the complex nature of biological development and the phenotypic differences observed among individuals, even among those with identical genetic makeups. Factors such as radiation, temperature, behavior, nutrition, and stress play pivotal roles in determining how genes are expressed. The concept of the reaction range is central to understanding this interaction. It posits...
376
Factors Influencing Microbial Growth: Temperature
72
Microorganisms display remarkable adaptations, enabling them to thrive in diverse ecological niches across a wide range of temperatures. Temperature profoundly influences microbial growth by affecting enzymatic activity, membrane fluidity, and other cellular processes.Each microorganism operates within a specific temperature range defined by three cardinal points: minimum, optimum, and maximum. Below the minimum temperature, membranes lose fluidity, halting transport processes. Above the...
72


