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相关概念视频

DNA Microarrays02:34

DNA Microarrays

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Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...
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Genome-wide Association Studies-GWAS01:11

Genome-wide Association Studies-GWAS

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Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
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Epigenetic Regulation01:46

Epigenetic Regulation

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Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
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Genomics02:02

Genomics

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Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
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相关实验视频

Updated: Jul 22, 2025

Mapping Mammalian 3D Genome Interactions with Micro-C-XL
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Mapping Mammalian 3D Genome Interactions with Micro-C-XL

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AtlasXplore:一个用于可视化和共享空间表观基因组数据的网络平台.

Joshua Barnett1, Noori Sotudeh1, Poorvi Rao1

  • 1Bioinformatics and Software Engineering, AtlasXomics Inc, New Haven, CT 06519, United States.

Bioinformatics (Oxford, England)
|July 21, 2023
PubMed
概括

AtlasXplore是一个新的网络平台,用于探索空间表观基因组数据. 它允许研究人员在没有高级计算技能的情况下轻松可视化和分析复杂的数据集.

科学领域:

  • 基因组学就是基因组学.
  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学

背景情况:

  • 空间表观基因组数据集为组织调节机制提供了洞察力.
  • 分析这些复杂的数据集通常需要先进的计算专业知识.
  • 目前的工具限制了没有专业技能的研究人员的可访问性.

研究的目的:

  • 为了介绍AtlasXplore,一个用户友好的基于Web的平台.
  • 为了实现空间表观基因组数据的交互式导航和分析.
  • 民主化对复杂的表观基因组信息的访问.

主要方法:

  • 开发一个基于网络的平台,AtlasXplore.
  • 整合交互式数据探索工具.
  • 策划越来越多的空间表观基因组数据集集合.

主要成果:

  • AtlasXplore提供了空间表观基因组数据的直观导航.
  • 该平台支持不断扩展的分析工具套件.
  • 为不同计算背景的研究人员提供视觉探索.

结论:

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  • AtlasXplore提高了对空间表观基因组数据分析的可访问性.
  • 授权研究人员研究组织中的表观遗传调节.
  • 促进在生物研究中更广泛地利用空间表观遗传学.