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Nucleosome Remodeling02:54

Nucleosome Remodeling

9.1K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
9.1K
Chromatin Packaging02:21

Chromatin Packaging

15.4K
Each human somatic cell contains 6 billion base-pairs of DNA. Each base-pair is 0.34 nm long, which means that each diploid cell contains a staggering 2 meters of DNA. How is such a long DNA strand packed inside a nucleus measuring only 10 - 20 microns in diameter? 
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order...
15.4K
The Nucleosome02:33

The Nucleosome

16.2K
DNA in a human cell is almost 2m long and it is packed inside a tiny nucleus that is only a few microns in diameter. The level of compaction of DNA inside the nucleus is astonishing. It is organized into several sequentially higher levels of compaction to fit into such a tiny space. The most compact form of DNA is a chromosome that can be seen under a microscope in a dividing cell.
DNA is wound twice around a protein complex called histone core, that consist of 8 histone proteins. This complex...
16.2K
Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

23.3K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
23.3K
The Nucleosome Core Particle01:12

The Nucleosome Core Particle

913
Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
913
Duplication of Chromatin Structure02:05

Duplication of Chromatin Structure

5.5K
The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
5.5K

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相关实验视频

Updated: Jul 2, 2025

Author Spotlight: Getting an A with the 3Cs: Chromosome Conformation Capture for Undergraduates
09:13

Author Spotlight: Getting an A with the 3Cs: Chromosome Conformation Capture for Undergraduates

Published on: May 12, 2023

3.3K

核细胞间距控制着染色体的空间结构和可访问性.

Tilo Zülske1, Aymen Attou2, Laurens Groß1

  • 1Competence Center Bioinformatics, Institute for Applied Computer Science, Hochschule Stralsund, Stralsund, Germany.

Biophysical journal
|February 29, 2024
PubMed
概括

核细胞间距,而不是密度,是3D染色体结构和可访问性的关键. 定期间距确保了细胞功能的适当DNA可访问性,挑战了染色体研究中的先前假设.

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Assembly of Nucleosomal Arrays from Recombinant Core Histones and Nucleosome Positioning DNA
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Author Spotlight: Getting an A with the 3Cs: Chromosome Conformation Capture for Undergraduates
09:13

Author Spotlight: Getting an A with the 3Cs: Chromosome Conformation Capture for Undergraduates

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Assembly of Nucleosomal Arrays from Recombinant Core Histones and Nucleosome Positioning DNA
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Probing The Structure And Dynamics Of Nucleosomes Using Atomic Force Microscopy Imaging
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科学领域:

  • 分子生物学分子生物学
  • 遗传学 是一个遗传学.
  • 生物物理学的生物物理.

背景情况:

  • 染色体的三维 (3D) 结构对于调节细胞过程,如转录,至关重要.
  • 染色体的动态结构涉及DNA,基因组和核体,使长距离接触和空间可访问性成为可能.
  • 控制染色体3D组织的关键因素仍然不完全理解,之前的研究结果相互矛盾.

研究的目的:

  • 为了调查核细胞间距或核细胞密度是否对3D染色体可访问性更为重要.
  • 探索基本物理性质在生成现实的色素结构中的作用.

主要方法:

  • 利用计算机模型在生理核细胞度下模拟染色体体积.
  • 专注于分析核细胞间隔规律性与核细胞度对染色质可访问性的影响.
  • 将模拟结果与已建立的电子显微镜数据进行比较.

主要成果:

  • 发现核细胞间距的规律性对于染色体网络对扩散过程的可访问性至关重要.
  • 核细胞度的变化对染色质可访问性和纤维特性的影响最小.
  • 使用基本物理特性模拟的染色质结构与已发表的电子显微镜观测结果相匹配.
  • 高核细胞密度不会破坏类似纤维的结构,也不会改变基因组位置的接触概率.

结论:

  • 核细胞间距的规律性,而不是密度,是3D染色体组织和可访问性的首要决定因素.
  • 这些发现挑战了关于核细胞密度在染色质结构中的作用的先前假设.
  • 核细胞间距的变化代表了调节空间染色体结构和基因组功能的潜在机制.