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相关概念视频

Improving Translational Accuracy02:07

Improving Translational Accuracy

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Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
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Operons02:09

Operons

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Prokaryotes can control gene expression through operons—DNA sequences consisting of regulatory elements and clustered, functionally related protein-coding genes. Operons use a single promoter sequence to initiate transcription of a gene cluster (i.e., a group of structural genes) into a single mRNA molecule. The terminator sequence ends transcription. An operator sequence, located between the promoter and structural genes, prohibits the operon’s transcriptional activity if bound by...
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Prokaryotic Transcriptional Activators and Repressors01:58

Prokaryotic Transcriptional Activators and Repressors

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The organization of prokaryotic genes in their genome is notably different from that of eukaryotes. Prokaryotic genes are organized, such that the genes for proteins involved in the same biochemical process or function are located together in groups. This group of genes, along with their regulatory elements, are collectively known as an operon. The functional genes in an operon are transcribed together to give a single strand of mRNA known as polycistronic mRNA.
Transcription of prokaryotic...
20.9K
Cis-regulatory Sequences02:02

Cis-regulatory Sequences

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Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
9.8K
Cell Specific Gene Expression01:58

Cell Specific Gene Expression

13.6K
Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...
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相关实验视频

Updated: Jun 21, 2025

Engineering Adherent Bacteria by Creating a Single Synthetic Curli Operon
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Engineering Adherent Bacteria by Creating a Single Synthetic Curli Operon

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改进生物循环操作预测:重新审视操作预测问题

Peter E Midford, John Cadigan, Peter D Karp

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    概括
    此摘要是机器生成的。

    通过向Pathway Tools预测器添加新功能,可以在微生物基因组中改进操作预测. 七个新功能中的六个提高了准确性,证明了综合基因组数据对基因功能和表达分析的价值.

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    Mapping Bacterial Functional Networks and Pathways in Escherichia Coli using Synthetic Genetic Arrays

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    相关实验视频

    Last Updated: Jun 21, 2025

    Engineering Adherent Bacteria by Creating a Single Synthetic Curli Operon
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    Engineering Adherent Bacteria by Creating a Single Synthetic Curli Operon

    Published on: November 16, 2012

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    A Protocol for Computer-Based Protein Structure and Function Prediction
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    科学领域:

    • 微生物基因组学 微生物基因组学
    • 生物信息学是一种生物信息学.
    • 计算生物学是一种计算生物学.

    背景情况:

    • 操作组织对于微生物基因组注释至关重要,为基因功能提供了洞察力,并有助于基因表达数据的解释.
    • 准确的操作预测对于理解微生物遗传组织和调节机制至关重要.

    研究的目的:

    • 为了提高Pathway Tools操作预测器的性能.
    • 评估新功能对操作预测准确性的影响.

    主要方法:

    • 在操作子预测器中纳入了七个新特性,包括共享的基因本体学生物过程术语,密码子使用相似性,GC含量,相关基因表达和共享的蛋白质复合体.
    • 评估了增强的操作子预测器的预测性能.

    主要成果:

    • 增加了六个新功能,使操作预测器的性能从79.55%提高到83.49%,错误率降低了19.3%.
    • 排除基因表达数据导致精度提高了14.7% (82.547%).
    • 一个拟议的功能和一个以前使用的功能显示没有影响,并被删除.

    结论:

    • 多种特征的整合显著提高了微生物基因组中的操作预测准确性.
    • 虽然单个特征显示了预测价值,但它们的综合影响表明了潜在的特征冗余.
    • 为了获得最佳的操作预测模型,需要进一步细化特征选择.