使用RO-Crate记录工作流程运行的来源.
Simone Leo1, Michael R Crusoe2,3,4, Laura Rodríguez-Navas5
1Center for Advanced Studies, Research, and Development in Sardinia (CRS4), Pula (CA), Italy.
PloS one
|September 10, 2024
概括
工作流运行RO-Crate通过捕获工作流执行来源来增强科学计算. 这种可互操作的模型确保了跨多种系统的可追溯性和可重复性,改善了数据质量评估.
科学领域:
- 计算科学 计算科学
- 数据管理数据管理
- 科学复制性 科学复制性
背景情况:
- 追踪科学计算结果对于数据可追溯性,可复制性和质量评估至关重要.
- 现有的工作流来源数据模型在不同的工作流管理系统中缺乏可互操作的采用.
- 需要一种标准化,可互操作的方法来捕获和共享计算工作流的来源.
研究的目的:
- 介绍工作流 运行RO-Crate,这是RO-Crate和Schema.org的扩展,用于捕获计算工作流执行来源.
- 提供一个捆绑工作流输入,输出,代码和其他相关对象的模型.
- 为了促进从异质系统运行的工作流之间的互操作性比较.
主要方法:
- 开发工作流程运行RO-Crate,扩展RO-Crate (研究对象箱) 和schema.org.
- 确保与来源的W3C PROV标准保持一致.
- 在六个不同的工作流管理系统中实现了该模型.
- 通过数字图像分析中的两个机器学习用例验证了模型.
主要成果:
- 工作流程 运行RO-Crate使得捕获不同细分级别的来源.
- 该模型成功地捆绑了所有相关的工作流对象.
- 现在可以在异质系统中的工作流程运行之间进行可互操作的比较.
- 在六个工作流系统中成功实施,证明了广泛的适用性.
结论:
- 工作流运行RO-Crate提供了一个标准化和可互操作的解决方案,用于捕获计算工作流的来源.
- 该模型支持增强科学数据产品的可追溯性,可复制性和质量评估.
- 它被多个工作流系统所采用,以及证明的用例突出显示了它在科学研究中的实际价值.
相关概念视频
Data Reporting and Recording
4.6K
Reporting and recording are crucial in data documentation. The timely, thorough, and accurate documentation of facts is essential when recording patient data. Failure to record findings during an assessment or interpretation of a problem will result in loss of information and make the patient document unreliable. The reader is left with general impressions if the information is not specific. A recording is documenting data of the individual's health information in a traceable, secure, and...
4.6K
Methods of Documentation I: Source-Oriented Records
1.1K
Source-oriented records, or SOR, are medical record-keeping organized by the data source. The SOR system was first developed in the mid-1900s to organize the growing patient data in hospitals and other healthcare facilities.
In an SOR, each discipline involved in patient care maintains a separate medical record section. This record-keeping method enables easy tracking of patient progress and ensures healthcare staff have access to up-to-date information.
Key Attributes include the following:
In an SOR, each discipline involved in patient care maintains a separate medical record section. This record-keeping method enables easy tracking of patient progress and ensures healthcare staff have access to up-to-date information.
Key Attributes include the following:
1.1K
Interpreting Run Charts
95
Run charts, essentially line graphs plotted over time, serve as fundamental yet effective tools for process analysis. They chronicle data sequentially, facilitating the identification of trends, shifts, or cyclical movements. This graphical representation is instrumental in determining whether a process is stable or exhibits signs of potential instability indicative of special cause variation. In the healthcare domain, run charts depict infection rates over time, enabling hospitals to monitor...
95
Ribosomal RNA Synthesis
3.2K
3.2K
Quantifying Work
19.1K
As a system undergoes a change, its internal energy can change, and energy can be transferred from the system to the surroundings, or from the surroundings to the system.
19.1K
Lineage Commitment
3.0K
Commitment is the process whereby stem cells:
3.0K


