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相关概念视频

Cis-regulatory Sequences02:02

Cis-regulatory Sequences

9.8K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
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Master Transcription Regulators02:23

Master Transcription Regulators

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Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a  complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
6.9K
Cellular Differentiation00:57

Cellular Differentiation

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How does a complex organism such as a human develop from a single cell? It all starts from a single fertilized egg which gives rise to a vast array of cell types, such as nerve cells, muscle cells, and epithelial cells that characterize the adult? Throughout development and adulthood, cellular differentiation leads cells to assume their final morphology and physiology. Differentiation is the process by which unspecialized cells become specialized to carry out distinct functions.
A zygote is a...
2.6K
Cooperative Binding of Transcription Regulators02:13

Cooperative Binding of Transcription Regulators

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Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome.  Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form...
6.4K
Combinatorial Gene Control02:33

Combinatorial Gene Control

8.3K
Combinatorial gene control is the synergistic action of several transcriptional factors to regulate the expression of a single gene. The absence of one or more of these factors may lead to a significant difference in the level of gene expression or repression.
The expression of more than 30,000 genes is controlled by approximately 2000-3000 transcription factors. This is possible because a single transcription factor can recognize more than one regulatory sequence. The specificity in gene...
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RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

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Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
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单细胞Cis调节元件的表征,为细胞分化带来影响.

Ying-Ying Ren1,2, Zhen Liu1,2,3

  • 1State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.

Genome biology and evolution
|November 7, 2024
PubMed
概括

在多种细胞类型中活跃的单细胞cis-regulatory元素是细胞分化的关键. 它们的基因组特征,如转录因子结合和进化保护,为发育基因调节提供了洞察力.

关键词:
这就是为什么CRE CRE CRE细胞分化的细胞分化.基因组特征 基因组特征类型的类型.

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Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
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科学领域:

  • 基因组学就是基因组学.
  • 发展生物学 发展生物学
  • 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.

背景情况:

  • 细胞调节元素控制基因表达,对细胞在发育过程中的分化至关重要.
  • 参与发育的单细胞cis-regulatory元素的基因组特征尚未完全理解.

研究的目的:

  • 系统地分析小脑发育中的单细胞cis调节元件的基因组特征.
  • 了解由这些元素控制的细胞分化的调节机制.

主要方法:

  • 分析了大约25万个假定的单细胞cis调节元件,使用来自小脑发育的小鼠snATAC-seq数据.
  • 评估类效应,转录因子结合动机,GC含量,转录开始地点的距离和进化保存.

主要成果:

  • 超过80%的分析元素表现出性,在多种细胞类型中活跃.
  • 类型与转录因子动图密度/多样性和GC含量正相关,与转录开始地点的距离负相关.
  • 与细胞分化相关的元素显示了增强的进化保护,动机多样性,GC含量和与基因的更大距离.

结论:

  • 这项研究揭示了单细胞cis-regulatory元素的一般基因组特征.
  • 研究结果提供了对基因组和进化基础的见解,这些元素如何调节发育过程中的细胞分化.