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相关概念视频

Mutations01:35

Mutations

33.0K
Mutations are changes in the sequence of DNA. These changes can occur spontaneously or they can be induced by exposure to environmental factors. Mutations can be characterized in a number of different ways: whether and how they alter the amino acid sequence of the protein, whether they occur over a small or large area of DNA, and whether they occur in somatic cells or germline cells.
Chromosomal Alterations Are Large-Scale Mutations
While point mutations are changes in a single nucleotide in...
33.0K
Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

13.9K
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
13.9K
Mismatch Repair01:36

Mismatch Repair

39.8K
Overview
39.8K
Multi-species Conserved Sequences02:51

Multi-species Conserved Sequences

3.9K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
3.9K
DNA as a Genetic Template02:05

DNA as a Genetic Template

21.6K
Two structural features of the DNA molecule provide a basis for the mechanisms of heredity: the four nucleotide bases and its double-stranded nature. The Watson-Crick model of double-helical DNA structure, proposed in 1952, drew heavily upon the X-ray crystallography work of researchers Rosalind Franklin and Maurice Wilkins. Watson, Crick, and Wilkins jointly received the Nobel Prize in Physiology or Medicine for their work in 1962. Franklin was, controversially, excluded from the prize for...
21.6K
Overview of Transposition and Recombination02:13

Overview of Transposition and Recombination

15.2K
Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
15.2K

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相关实验视频

Updated: May 27, 2025

Following the Dynamics of Structural Variants in Experimentally Evolved Populations
04:52

Following the Dynamics of Structural Variants in Experimentally Evolved Populations

Published on: February 3, 2023

907

超级突变3:在定义的核酸环境中识别特定的突变模式,允许多状态字符.

Zena Lapp1, Hyejin Yoon1, Brian Foley1

  • 1Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM 87545, United States.

Bioinformatics advances
|February 21, 2025
PubMed
概括

超变异3软件识别病毒超变异事件,提高了序列分析的准确性. 这个更新的工具处理复杂的序列数据,包括多状态字符和差距,以便进行更可靠的病毒进化研究.

科学领域:

  • 病毒学 病毒学
  • 生物信息学是一种生物信息学.
  • 进化生物学 进化生物学

背景情况:

  • APOBEC3F和APOBEC3G酶诱导病毒序列中的突变.
  • 过度突变的序列可能会扭曲病毒演变的分析.
  • 之前的Hypermut版本缺乏对多状态字符和空白的支持.

研究的目的:

  • 为了呈现一个更新的,用户友好的Hypermut版本.
  • 为了能够检测超突变事件,考虑多状态的特征和差距.
  • 为了促进将超变异检测集成到序列分析管道中.

主要方法:

  • 在Python 3中开发Hypermut 3.
  • 实现处理多状态字符和空白的功能.
  • 提供网络和命令行接口.

主要成果:

  • 超级突变3成功检测到超级突变事件,包括G到A突变.
  • 该工具可以容纳多状态字符和序列对齐中的差距.
  • 现在可以使用用户友好的Web和命令行版本.

结论:

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Last Updated: May 27, 2025

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Following the Dynamics of Structural Variants in Experimentally Evolved Populations

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907
Isolation of Fidelity Variants of RNA Viruses and Characterization of Virus Mutation Frequency
18:10

Isolation of Fidelity Variants of RNA Viruses and Characterization of Virus Mutation Frequency

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Identifying Mutations by High Resolution Melting in a TILLING Population of Rice
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  • 超级突变3可以提高病毒序列分析的准确性.
  • 更新的工具提供了一种强大的方法来识别非代表性病毒序列.
  • 该软件有助于对病毒进化进行更可靠的研究.