在tRNA上对5-formylcytidine的动态调节
Xuemeng Sun1, Ralph E Kleiner1
1Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States.
ACS chemical biology
|March 13, 2025
概括
研究人员探索了tRNA中的5-formylcytidine (f5C) RNA修饰. 他们发现f5C水平与铁和氧气发生变化,影响蛋白质翻译和密码解码.
科学领域:
- 分子生物学分子生物学
- 在RNA生物学,RNA生物学.
- 史诗转录组学 史诗转录组学
背景情况:
- 转录后RNA修饰对于生物过程至关重要.
- 许多RNA修饰的分子机制仍然不太清楚.
- 5-甲基丁 (f5C) 是一种tRNA修饰,其功能作用尚不清楚.
研究的目的:
- 在tRNA中描述5-formylcytidine (f5C) 的分布和动态调节.
- 调查f5C水平对铁和氧气等环境因素的反应.
- 阐明f5C在tRNA摇摆解码和蛋白质翻译中的作用.
主要方法:
- 使用核酸液体染色体质谱法 (LC-MS) 量化大量f5C水平.
- 使用核酸分辨率f5C测序测量个体修饰静脉测量.
- 使用记者测试对翻译效率的评估.
主要成果:
- tRNAs上的C修饰是动态调节的,对细胞铁和氧气水平有反应.
- 在细胞系和小鼠组织中发现了大量f5C水平的乱.
- 在tRNA-Leu-CAA上f5C的损失损害了Leu UUA编码体的解码,影响了蛋白质翻译.
结论:
- f5C 是一个由环境线索调节的动态表达体记号.
- 在tRNA-Leu-CAA上的C对于准确的摇摆解码至关重要.
- 这些发现揭示了新的机制,将环境传感与蛋白质翻译调节联系起来.
相关概念视频
Transfer RNA Synthesis
11.8K
One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
11.8K
Regulation of Expression at Multiple Steps
862
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
862
Regulation of Expression Occurs at Multiple Steps
22.2K
Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
22.2K
tRNA Activation
18.8K
Aminoacyl-tRNA synthetases are present in both eukaryotes and bacteria. Though eukaryotes have 20 different aminoacyl-tRNA synthetases to couple to 20 amino acids, many bacteria do not have genes for all of these aminoacyl-tRNA synthetases. Despite this, they still use all 20 amino acids to synthesize their proteins. For instance, some bacteria do not have the gene encoding the enzyme that couples glutamine with its partner tRNA. In these organisms, one enzyme adds glutamic acid to all of the...
18.8K
RNA Structure
4.6K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
4.6K
RNA Stability
33.2K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
33.2K


