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对于运行长度编码的Burrows-Wheeler转换字母顺序问题的启发式.
Lily Major1, Amanda Clare1, Jacqueline W Daykin1,2,3
1Department of Computer Science, Aberystwyth University, Penglais, Aberystwyth, SY23 3DB UK.
概括
为BWT优化字母顺序显著改善了运行长度编码 (RLE) 压缩. 当地搜索策略有效地发现了比随机抽样更好的排序,以提高数据的可压缩性.
科学领域:
- 计算生物学是一种计算生物学.
- 数据压缩算法数据压缩算法
- 字符串处理 字符串处理
背景情况:
- 布劳斯-惠勒转换 (BWT) 对生物信息学和文件压缩至关重要.
- 将BWT与运行长度编码 (RLE) 结合起来,可以实现高效的数据查询.
- 当前的方法往往忽略了字母顺序对BWT可压缩性的影响.
研究的目的:
- 为了研究字母顺序对运行长度编码BWT (RLBWT) 尺寸的影响.
- 开发一种启发式方法来找到最佳的字母顺序.
- 通过修改BWT的分类步骤来提高压缩效率.
主要方法:
- 探索非微不足道的字母顺序案例,以尽量减少RLBWT.
- 随机抽样与字母顺序的本地搜索策略的比较.
- 分析ASCII等初始排序,字母外观和字母频率.
主要成果:
- 随机采样的字母顺序通常会产生低于最佳的压缩.
- 当地搜索策略在几个步骤中显示了显著的压缩改进.
- 选择的字母顺序大大影响了RLBWT的运行次数.
结论:
- 字母顺序是BWT压缩中的一个关键,但经常被忽视的因素.
- 局部搜索启发式为优化RLBWT提供了一种实用和有效的方法.
- 这项研究表明,通过明智的字母顺序来实现可实现的压缩性.
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