Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Histone Modification02:32

Histone Modification

12.9K
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
12.9K
Chromatin Packaging02:21

Chromatin Packaging

15.0K
Each human somatic cell contains 6 billion base-pairs of DNA. Each base-pair is 0.34 nm long, which means that each diploid cell contains a staggering 2 meters of DNA. How is such a long DNA strand packed inside a nucleus measuring only 10 - 20 microns in diameter? 
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order...
15.0K
Nucleosome Remodeling02:54

Nucleosome Remodeling

8.9K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
8.9K
The Nucleosome Core Particle01:12

The Nucleosome Core Particle

811
Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
811

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

DNA Sequence and Histone Variant H2A.Z Jointly Govern Nucleosome Unwrapping Pathways.

bioRxiv : the preprint server for biology·2026
Same author

H2A.Z facilitates Sox2-nucleosome interaction by promoting DNA and histone H3 tail mobility.

Nucleic acids research·2026
Same author

Mapping Allosteric Communication in the Nucleosome with Conditional Activity.

Journal of chemical information and modeling·2026
Same author

Mapping Allosteric Communication in the Nucleosome with Conditional Activity.

bioRxiv : the preprint server for biology·2025
Same author

The need to implement FAIR principles in biomolecular simulations.

Nature methods·2025
Same author

H2A.Z facilitates Sox2-nucleosome interaction by promoting DNA and histone H3 tail mobility.

bioRxiv : the preprint server for biology·2025

相关实验视频

Updated: May 17, 2025

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
09:17

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

Published on: March 1, 2022

3.0K

使用马尔科夫状态建模揭示了希斯尾的形式动力学.

Rutika Patel1,2, Sharon M Loverde1,2,3,4

  • 1Ph.D. Program in Biochemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States.

Journal of chemical theory and computation
|April 28, 2025
PubMed
概括

核子体中的质子尾,染色体的构建块,采用不同的构造. H2B尾部的乙化促进了二次结构,影响了基因调节.

更多相关视频

Using Three-color Single-molecule FRET to Study the Correlation of Protein Interactions
11:22

Using Three-color Single-molecule FRET to Study the Correlation of Protein Interactions

Published on: January 30, 2018

10.0K
Deciphering Molecular Mechanism of Histone Assembly by DNA Curtain Technique
06:32

Deciphering Molecular Mechanism of Histone Assembly by DNA Curtain Technique

Published on: March 9, 2022

1.7K

相关实验视频

Last Updated: May 17, 2025

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
09:17

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

Published on: March 1, 2022

3.0K
Using Three-color Single-molecule FRET to Study the Correlation of Protein Interactions
11:22

Using Three-color Single-molecule FRET to Study the Correlation of Protein Interactions

Published on: January 30, 2018

10.0K
Deciphering Molecular Mechanism of Histone Assembly by DNA Curtain Technique
06:32

Deciphering Molecular Mechanism of Histone Assembly by DNA Curtain Technique

Published on: March 9, 2022

1.7K

科学领域:

  • 结构生物学是结构生物学.
  • 分子动力学分子动力学
  • 生物物理学的生物物理.

背景情况:

  • 核细胞核粒子 (NCP) 是基本的染色体单元,对DNA包装和调节至关重要.
  • 基因组N端尾部经历表观遗传修饰,影响染色质结构和转录等生物过程.
  • 了解基因组尾动态对于破译基因调节机制至关重要.

研究的目的:

  • 用先进的计算方法阐明基质子尾的不同构造和动态.
  • 为了表征核细胞体内的基斯顿尾巴的动力学和形状格局.
  • 研究乙化对H2B尾巴结构和动态的特定影响.

主要方法:

  • 全原子分子动力学 (MD) 在微秒时间尺度上模拟核体.
  • 构建马尔科夫状态模型 (MSM) 来分析形态动态.
  • 时间滞后的独立组件分析 (tICA) 和k-means集群用于识别缓慢的动态和结构状态.

主要成果:

  • MSM成功地确定了不同的构造状态和转变概率的基因组尾巴.
  • 分析揭示了控制尾巴形状的基本缓慢动态.
  • 证明H2B尾部的乙化可以增加二次结构形成和过渡速率.

结论:

  • 这项研究提供了关于基因组尾巴的结构动态和动态的见解.
  • 这些发现突显了H2B尾部乙化在调节核细胞稳定性和基因调节中的作用.
  • 这项工作奠定了理解质体尾部构造的功能意义的基础.