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相关概念视频

Viral Mutations00:36

Viral Mutations

A mutation is a change in the sequence of bases of DNA or RNA in a genome. Some mutations occur during replication of the genome due to errors made by the polymerase enzymes that replicate DNA or RNA. Unlike DNA polymerase, RNA polymerase is prone to errors because it is not capable of “proofreading” its work. Viruses with RNA-based genomes, like HIV, therefore accrue mutations faster than viruses with DNA-based genomes. Because mutation and recombination provide the raw material for adaptive...
Next-generation Sequencing03:00

Next-generation Sequencing

The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features.
Mechanisms of Retrovirus-induced Cancers01:51

Mechanisms of Retrovirus-induced Cancers

Retroviruses are RNA viruses that have been shown to cause cancers in diverse species, including chickens, mice, cats, and monkeys. The RNA genomes of these viruses are first reverse-transcribed into single and then double-stranded DNA (dsDNA) copies. This dsDNA called proviral DNA then integrates into the host genome. Subsequently, the host cell transcribes the proviral DNA in concert with the chromosomal DNA. This leads to the production of viral RNA and proteins that assemble at the host...
Mechanisms of Retrovirus-induced Cancers01:51

Mechanisms of Retrovirus-induced Cancers

Retroviruses are RNA viruses that have been shown to cause cancers in diverse species, including chickens, mice, cats, and monkeys. The RNA genomes of these viruses are first reverse-transcribed into single and then double-stranded DNA (dsDNA) copies. This dsDNA called proviral DNA then integrates into the host genome. Subsequently, the host cell transcribes the proviral DNA in concert with the chromosomal DNA. This leads to the production of viral RNA and proteins that assemble at the host...
Size and Structure of Viral Genomes01:26

Size and Structure of Viral Genomes

Viral genomes exhibit remarkable diversity in size, structure, and composition, influencing their replication strategies and interactions with host cells. These genomes consist of either DNA or RNA and may be linear or circular. Additionally, they can be single-stranded or double-stranded, with each configuration affecting how the virus propagates within a host. RNA viruses, for instance, generally have smaller genomes than DNA viruses, a factor that contributes to their high mutation rates and...
Viruses with RNA Genomes01:29

Viruses with RNA Genomes

RNA viruses are categorized into positive-strand, negative-strand, or double-stranded groups based on their genomic structure and replication mechanisms. This classification dictates how they exploit host cellular machinery for protein synthesis and replication. Some RNA viruses also utilize reverse transcription as part of their life cycle, further diversifying their replication strategies.Positive-Strand RNA VirusesPositive-strand RNA viruses have genomes that function directly as messenger...

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相关实验视频

Updated: May 13, 2026

Detecting Somatic Genetic Alterations in Tumor Specimens by Exon Capture and Massively Parallel Sequencing
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Detecting Somatic Genetic Alterations in Tumor Specimens by Exon Capture and Massively Parallel Sequencing

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XVir:一种基于变压器的架构,用于识别癌症样本中的病毒读数.

Shorya Consul1, John Robertson1, Haris Vikalo1

  • 1Chandra Family Department of Electrical and Computer Engineering, The University of Texas at Austin, Austin, Texas, USA.

Journal of computational biology : a journal of computational molecular cell biology
|May 20, 2025
PubMed
概括

一个新的深度学习工具,Xvir,准确地检测人类瘤中的病毒DNA. 这一进步有助于理解15%的癌症与病毒感染有关,改善了癌症研究和诊断.

科学领域:

  • 在瘤学瘤学.
  • 病毒学 病毒学
  • 生物信息学是一种生物信息学.
  • 计算生物学 计算生物学

背景情况:

  • 全球约有15%的癌症与病毒感染有关,包括HPV和HBV等瘤病毒.
  • 测序技术的进步使瘤DNA的癌症病毒关联分析成为可能.
  • 在瘤中检测多样化的病毒DNA对于计算方法和机器学习模型来说是一个挑战.

研究的目的:

  • 推出Xvir,一种用于可靠识别人类瘤中的病毒DNA的新型数据管道.
  • 开发一种强大的深度学习模型,用于在复杂的基因组数据中检测科病毒.
  • 改进对癌症病毒贡献的计算分析.

主要方法:

  • 开发了Xvir,一个使用基于变压器的深度学习架构的数据管道.
  • 在混合测序上训练模型,从病毒和人类基因组读取.
  • 在半实验数据上评估性能,与最先进的方法进行比较.

主要成果:

  • XVir在检测人类瘤中的病毒DNA方面实现了高分类准确度.
  • 该模型在各种病毒种群和实验环境中展示了强大的性能.
  • XVir的性能优于竞争对手的方法,训练速度要快得多.
关键词:
癌症 癌症 癌症 癌症 癌症这是分类分类的分类.变压器 变压器病毒病毒病毒病毒.

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Integration of Wet and Dry Bench Processes Optimizes Targeted Next-generation Sequencing of Low-quality and Low-quantity Tumor Biopsies
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Targeted RNA Sequencing Assay to Characterize Gene Expression and Genomic Alterations
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Last Updated: May 13, 2026

Detecting Somatic Genetic Alterations in Tumor Specimens by Exon Capture and Massively Parallel Sequencing
11:02

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Integration of Wet and Dry Bench Processes Optimizes Targeted Next-generation Sequencing of Low-quality and Low-quantity Tumor Biopsies
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Integration of Wet and Dry Bench Processes Optimizes Targeted Next-generation Sequencing of Low-quality and Low-quantity Tumor Biopsies

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Targeted RNA Sequencing Assay to Characterize Gene Expression and Genomic Alterations

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结论:

  • XVir提供了一种可靠和高效的解决方案,用于识别瘤样本中的瘤病毒DNA.
  • 深度学习方法增强了对病毒驱动癌症的研究.
  • 这种工具有可能推进癌症诊断和研究病毒瘤发生的研究.