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相关概念视频

Protein Folding01:22

Protein Folding

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Molecular Chaperones and Protein Folding03:00

Molecular Chaperones and Protein Folding

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The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
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Protein Organization01:13

Protein Organization

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Conservation of Protein Domains Over Different Proteins02:26

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Protein domains are small structurally independent units that are part of a single amino acid chain.  Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
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Protein and Protein Structure02:15

Protein and Protein Structure

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Proteins are one of the most abundant organic molecules in living systems and have the most diverse range of functions of all macromolecules. Proteins may be structural, regulatory, contractile, or protective. They may serve in transport, storage, or membranes; or they may be toxins or enzymes. Their structures, like their functions, vary greatly. They are all, however, amino acid polymers arranged in a linear sequence.
A protein's shape is critical to its function. For example, an enzyme...
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Protein Families02:47

Protein Families

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Protein families are groups of homologous proteins; that is, they have similarities in amino acid sequences and three-dimensional structures. Protein families usually occur because of gene duplication, where an additional copy of a gene is inserted into the genome of an organism.   Mutations that change the amino acids but still allow the protein to be properly synthesized, will lead to new protein family members.   If these new proteins contain similar amino acids in key...
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相关实验视频

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Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
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从自然序列多样性推断出蛋白质折叠机制.

Ezequiel A Galpern1, Ernesto A Roman2, Diego U Ferreiro1

  • 1Laboratorio de Fisiología de Proteínas, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires and Consejo Nacional de Investigaciones Científicas y Técnicas, Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales (IQUIBICEN-CONICET), Buenos Aires, Argentina.

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概括
此摘要是机器生成的。

蛋白质序列揭示了进化约束,以预测折叠机制. 进化能量场将氨基酸序列映射到蛋白质折叠,从而可以模拟折叠路径和突变影响.

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Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
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科学领域:

  • 生物物理学的生物物理.
  • 计算生物学 计算生物学
  • 蛋白质科学 蛋白质科学

背景情况:

  • 蛋白质序列编码进化历史,影响结构,稳定性和功能.
  • 仅从序列中预测蛋白质折叠机制是生物物理学中的一个重大挑战.

研究的目的:

  • 仅使用氨基酸序列信息推断球状蛋白质折叠机制.
  • 研究蛋白质拓,序列多样性和折叠合作性之间的关系.

主要方法:

  • 将一体和两体进化能量场映射到一个粗粒度的折叠模型中.
  • 使用Ising链模型模拟折叠机制,使用从氨基酸序列中获得的折叠能量.
  • 分析不同蛋白质家族和拓学的折叠合作性.

主要成果:

  • 蛋白质序列信息可以预测原生结构和稳定性之外的折叠机制.
  • 蛋白质拓局限于家族内部的折叠合作性变异性.
  • 与β结构和α/β结构相比,α-螺旋 (α) 拓表现出更多不同的折叠场景.
  • 稳定性和合作性的突变诱导的变化可以从基于序列的进化模型中计算出来.

结论:

  • 基于序列的进化模型为了解蛋白质折叠动态提供了一个强大的工具.
  • 该研究展示了一种直接从蛋白质序列预测折叠机制和突变效应的方法.
  • 这些发现提供了对蛋白质折叠多样性和约束的进化基础的见解.