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相关概念视频

Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

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The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
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Genome Size and the Evolution of New Genes03:21

Genome Size and the Evolution of New Genes

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While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
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Exon Recombination02:32

Exon Recombination

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The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes. 
Exon shuffling follows “splice frame rules.” Each exon...
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Gene Duplication and Divergence02:37

Gene Duplication and Divergence

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The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was  generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
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Gene Families01:57

Gene Families

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Gene families consist of groups of genes proposed to have originated from a common ancestor. Typically these arise through events in which a gene or genes are mistakenly duplicated during cell division. Unlike their parent genes (which are subject to selection pressure to maintain function), these gene copies do not need to preserve their sequences and may evolve at a relatively faster rate.
Occasionally these regions can be adapted to take on new roles within the organism, becoming novel genes...
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Conservative Site-specific Recombination and Phase Variation02:53

Conservative Site-specific Recombination and Phase Variation

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Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
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Directed Evolution Method in Saccharomyces cerevisiae: Mutant Library Creation and Screening
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基因库的快速连续演变,朝着任意的功能发展.

Alexander Olek Pisera, Alireza Tanoori, Chang C Liu

    bioRxiv : the preprint server for biology
    |July 14, 2025
    PubMed
    概括

    研究人员开发了OrthoRep辅助连续图书馆进化 (ORACLE) 以快速演变新的基因功能. 这种系统使得在100代以下能够发现具有细胞功能的新基因变异.

    科学领域:

    • 进化生物学 进化生物学
    • 合成生物学 合成生物学
    • 分子生物学分子生物学

    背景情况:

    • 新基因功能的出现对生物创新至关重要,但缺乏用于前性研究的实验工具.
    • 现有的定向进化系统往往侧重于单个基因和功能,与自然进化的复杂,多基因方法不同.
    • 在实验室中模仿自然基因进化对于理解和利用生物创新至关重要.

    研究的目的:

    • 引入一种新的实验系统,OrthoRep辅助连续图书馆进化 (ORACLE),用于快速,大规模的基因功能进化.
    • 为了使新的基因功能在复杂的选择性压力下出现的观察和研究.
    • 发现具有新细胞功能的新基因变异,并探索基因创新的机制.

    主要方法:

    • 使用高多样性,功能不可知的基因库 (酵母,细菌,植物,人类).
    • 将库编码到酵母中的OrthoRep的p1等离子体上,以实现快速,持久的突变 (比宿主基因组快100万倍).
    • 应用复杂的体内选择性压力来推动新基因功能的进化.

    主要成果:

    • 发现了许多新的基因变异,在约100代 (<1个月) 内赋予新的细胞功能.
    • 从最初的非表型状态观察到基因迅速演变为转录因子,伴侣和目标抑制剂.

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  • 通过选择证明了现有的遗传物质可以很容易地获得新的功能.
  • 结论:

    • 甲骨文有效地加速了对基因功能进化和创新的观察.
    • 该系统有助于发现各种应用的定制生物分子.
    • 为探索基因创新的基本机制提供了一个强大的平台.