下一篇:一个基于Web的报告工具和数据库,用于可重复的下一流管道.
Bishwa Ghimire1,2,3, Nicholas Booth3,4, Tapio Lönnberg3,4
1Medicity Research Laboratory, University of Turku, Turku, 20520, Finland.
Bioinformatics advances
|November 3, 2025
概括
下一个是基于Web的工具,从分散的日志文件汇总和可视化Nextflow管道资源使用数据. 这提高了复杂的基因组数据分析的优化和可重现性.
科学领域:
- 生物信息学是一种生物信息学.
- 计算生物学 计算生物学
- 基因组数据分析 基因组数据分析
背景情况:
- 高通量基因组数据分析依赖于复杂的生物信息管道.
- 像Nextflow这样的工作流管理工具可以自动化这些管道.
- 管理和解析分散的Nextflow日志文件来处理资源使用是繁的.
研究的目的:
- 开发一个集中的解决方案来管理Nextflow管道资源使用数据.
- 为了促进优化和提高基于Nextflow的分析的可重复性.
- 提供管道性能的可访问概述.
主要方法:
- 开发了Nextpie,这是一个基于Web的工具,具有关系数据库.
- 将Nextflow日志数据集成到数据库中.
- 实现了资源使用的报告和交互式可视化功能.
主要成果:
- 下一条管道集中了Nextflow管道的综合资源使用信息.
- 该工具加速数据分析和管道性能交互可视化.
- 提供管道资源利用的易于理解的概述.
结论:
- Nextpie简化了Nextflow管道资源数据的管理.
- 该工具有助于优化管道性能并提高可重现性.
- 在GitHub上可以使用Nextpie,包括文档和示例数据.
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