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Viral Recombination00:57

Viral Recombination

24.9K
Cells are sometimes infected by more than one virus at once. When two viruses disassemble to expose their genomes for replication in the same cell, similar regions of their genomes can pair together and exchange sequences in a process called recombination. Alternatively, viruses with segmented genomes can swap segments in a process called reassortment.
24.9K
Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

17.9K
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
17.9K
Conservative Site-specific Recombination and Phase Variation02:53

Conservative Site-specific Recombination and Phase Variation

6.6K
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
6.6K
Gene Duplication and Divergence02:37

Gene Duplication and Divergence

7.8K
The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was  generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
7.8K
Mutation, Gene Flow, and Genetic Drift01:09

Mutation, Gene Flow, and Genetic Drift

61.7K
In a population that is not at Hardy-Weinberg equilibrium, the frequency of alleles changes over time. Therefore, any deviations from the five conditions of Hardy-Weinberg equilibrium can alter the genetic variation of a given population. Conditions that change the genetic variability of a population include mutations, natural selection, non-random mating, gene flow, and genetic drift (small population size).
61.7K
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

6.8K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
6.8K

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相关实验视频

Updated: Jan 10, 2026

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
08:03

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

2.7K

一个大流行规模的SARS-CoV-2祖先重组图.

Shing H Zhan1,2,3, Yan Wong1,4, Anastasia Ignatieva5,4

  • 1Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, United Kingdom.

bioRxiv : the preprint server for biology
|November 26, 2025
PubMed
概括

这项研究介绍了sc2ts,一种新的方法,通过推断称为祖先重组图 (ARG) 的复杂基因谱来分析SARS-CoV-2基因组数据. 这种方法准确地捕捉了病毒进化中的重组的影响.

关键词:
这就是ARG ARG.祖先重组图表的图表.这就是SARS-CoV-2病毒.再组合的复合方式.这就是Tskit Tskit.

更多相关视频

Methodology for the Efficient Generation of Fluorescently Tagged Vaccinia Virus Proteins
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Methodology for the Efficient Generation of Fluorescently Tagged Vaccinia Virus Proteins

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Author Spotlight: A Cost-Effective Genomic Workflow for Advancing Rabies Control in Resource-Limited Settings
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Author Spotlight: A Cost-Effective Genomic Workflow for Advancing Rabies Control in Resource-Limited Settings

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相关实验视频

Last Updated: Jan 10, 2026

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
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Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

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Methodology for the Efficient Generation of Fluorescently Tagged Vaccinia Virus Proteins
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Methodology for the Efficient Generation of Fluorescently Tagged Vaccinia Virus Proteins

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Author Spotlight: A Cost-Effective Genomic Workflow for Advancing Rabies Control in Resource-Limited Settings
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Author Spotlight: A Cost-Effective Genomic Workflow for Advancing Rabies Control in Resource-Limited Settings

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科学领域:

  • 基因组学就是基因组学.
  • 流行病学 流行病学
  • 计算生物学 计算生物学

背景情况:

  • 随着COVID-19大流行,数以百万计的SARS-CoV-2基因组序列产生,为进化分析创造了丰富的数据集.
  • 传统的家族遗传学方法假定重组是可以忽略不计的,将病毒谱系表示为简单的树,考虑到重组血统的普遍性,这是不够的.

研究的目的:

  • 开发和应用一种可扩展的方法,从大型病毒基因组数据集中推断网状 (非树状) 基因谱.
  • 为了准确地代表SARS-CoV-2的进化史,并考虑重组事件.

主要方法:

  • 开发了sc2ts,这是一种新的方法,可以在流行病规模上实时推断祖先重组图 (ARG).
  • 使用sc2ts推断为2.48万个SARS-CoV-2基因组的ARG.
  • 利用tskit软件生态系统进行高效的数据处理,分析和可视化.

主要成果:

  • 对248万个SARS-CoV-2基因组进行大规模ARG推断,提供了病毒演变的详细视图.
  • 澄清了复合SARS-CoV-2血统之间的关系.
  • 随着时间的推移量化重组率,并确定可检测重组的下限.

结论:

  • sc2ts方法提供了一种强大的工具,用于理解在再组合的情况下的病毒进化.
  • 推断的ARG为进一步的下游分析和SARS-CoV-2演变的可视化提供了经过验证的资源.
  • 这项工作强调了在对像SARS-CoV-2这样快速演变的病毒的基因学研究中考虑重组的重要性.