Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Conservative Site-specific Recombination and Phase Variation02:53

Conservative Site-specific Recombination and Phase Variation

6.6K
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
6.6K
Residual Plots01:07

Residual Plots

6.0K
A residual plot is a statistical representation of data used to analyze correlation and regression results. It helps verify the requirements for drawing specific conclusions about correlation and regression. To obtain the residual plot, first, the residual for each data value is calculated, which is simply the vertical distance between the observed and the predicted value obtained from the regression equation.
When the residual values are plotted against the variable x, it is called a residual...
6.0K
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

6.8K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
6.8K
Plotting of Topographic Maps01:29

Plotting of Topographic Maps

412
Topographic maps represent the Earth's surface features using contour lines, which connect points of equal elevation to create a two-dimensional representation of three-dimensional terrain. Creating a topographic map requires a systematic approach.Begin by plotting a scaled grid and marking intersections corresponding to the survey's elevation data points. Assign elevation values at these intersections to build the base map. Next, determine contour levels using a consistent contour interval,...
412
Homologous Recombination02:31

Homologous Recombination

6.0K
6.0K
Homologous Recombination02:31

Homologous Recombination

62.4K
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
62.4K

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

Tracing the evolutionary histories of ultra-rare variants using variational dating of large ancestral recombination graphs.

bioRxiv : the preprint server for biology·2026
Same author

A Pandemic-Scale Ancestral Recombination Graph for SARS-CoV-2.

bioRxiv : the preprint server for biology·2025
Same author

Accessible, Realistic Genome Simulation with Selection Using stdpopsim.

Molecular biology and evolution·2025
Same author

The promise and challenge of spatial inference with the full ancestral recombination graph under Brownian motion.

G3 (Bethesda, Md.)·2025
Same author

Accessible, realistic genome simulation with selection using stdpopsim.

bioRxiv : the preprint server for biology·2025
Same author

The promise and challenge of spatial inference with the full ancestral recombination graph under Brownian motion.

bioRxiv : the preprint server for biology·2025

相关实验视频

Updated: Jan 8, 2026

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
10:44

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

Published on: December 7, 2021

2.6K

tskit_arg_visualizer:对祖先重组图的交互绘图.

James Kitchens1, Yan Wong2

  • 1Department of Evolution & Ecology and Center for Population Biology, University of California-Davis, Davis, CA 95616, United States.

Bioinformatics advances
|December 15, 2025
PubMed
概括

本研究介绍了tskit_arg_visualizer,这是一个用于可视化祖先重组图 (ARG) 的Python包. 该工具有助于教学ARG概念和探索来自人口遗传学研究的复杂遗传数据.

科学领域:

  • 人口遗传学 人口遗传学
  • 计算生物学 计算生物学
  • 生物信息学是一种生物信息学.

背景情况:

  • 祖先重组图 (ARG) 对于理解重组血统中的遗传关系至关重要.
  • 最近ARG模拟和推断方面的进步增加了它们在人口遗传学中的重要性.
  • 有效利用ARG图形结构仍然是一个活跃的研究领域.

研究的目的:

  • 介绍tskit_arg_visualizer,一个新的Python包用于ARG的程序可视化.
  • 为研究人员提供一个工具,以更好地理解和探索ARG结构.
  • 为了促进教育目的和经验推断的ARG的分析.

主要方法:

  • 开发一个Python包,tskit_arg_visualizer.
  • 与D3.js库集成,用于交互式可视化.
  • 编程生成的ARG地图. 程序生成的ARG地图. 程序生成的ARG地图.

主要成果:

  • tskit_arg_visualizer 可以为ARG创建可视化.
  • 该工具是有效的教学基本的ARG概念.
  • 它支持从现实世界遗传数据集中衍生出的ARG的探索.

更多相关视频

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
08:03

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

2.7K
Mapping Alzheimer's Disease Variants to Their Target Genes Using Computational Analysis of Chromatin Configuration
04:41

Mapping Alzheimer's Disease Variants to Their Target Genes Using Computational Analysis of Chromatin Configuration

Published on: January 9, 2020

19.3K

相关实验视频

Last Updated: Jan 8, 2026

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
10:44

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

Published on: December 7, 2021

2.6K
Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
08:03

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

2.7K
Mapping Alzheimer's Disease Variants to Their Target Genes Using Computational Analysis of Chromatin Configuration
04:41

Mapping Alzheimer's Disease Variants to Their Target Genes Using Computational Analysis of Chromatin Configuration

Published on: January 9, 2020

19.3K

结论:

  • tskit_arg_visualizer为人口遗传学家提供了一个宝贵的资源.
  • 该套件提高了复杂的遗传关系数据的可访问性和可解释性.
  • 它弥合了ARG理论和实际数据分析之间的差距.