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相关概念视频

Chromatin Modification in iPS Cells01:32

Chromatin Modification in iPS Cells

2.2K
Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
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Spreading of Chromatin Modifications02:25

Spreading of Chromatin Modifications

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The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
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Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

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Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
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The Eukaryotic Promoter Region02:40

The Eukaryotic Promoter Region

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The eukaryotic promoter region is a segment of DNA located upstream of a gene. It contains an RNA polymerase binding site, a transcription start site, and several cis-regulatory sequences.  The proximal promoter region is located in the vicinity of the gene and has cis-regulatory sequences and the core promoter. The core promoter is the binding site for RNA polymerase and is usually located between -35 and +35 nucleotides from the transcription start site. The distal promoter regions are...
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The Eukaryotic Promoter Region02:40

The Eukaryotic Promoter Region

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Heterochromatin02:38

Heterochromatin

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The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions that take up more dye are called heterochromatin. Heterochromatin is further classified into two forms – constitutive heterochromatin and facultative heterochromatin.
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...
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相关实验视频

Updated: Feb 28, 2026

Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
10:28

Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers

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促进剂平衡的Rpd3 HDAC复合体在营养过渡时协调全球染色体重编程.

Saikat Bhattacharya, Benjamin M Sutter, Benjamin P Tu

    bioRxiv : the preprint server for biology
    |February 27, 2026
    PubMed
    概括

    基因脱乙酶Rpd3在酵母中的营养转移期间重编程染色质,平衡基因表达. 这确保了适当的代谢适应,通过控制基因活性和维持细胞功能.

    科学领域:

    • 分子生物学分子生物学
    • 酵母遗传学 酵母遗传学
    • 染色体生物学 染色体生物学

    背景情况:

    • 在*Saccharomyces cerevisiae*中,代谢灵活性依赖于适应性转录性重新连接.
    • 基因脱乙酶 (HDACs) 在调节基因表达方面发挥作用,但它们在代谢过渡期间的确切功能尚不清楚.
    • 在活性促进剂中HDAC丰富的悖论需要解决.

    研究的目的:

    • 为了研究基因组脱乙酶Rpd3在调解营养依赖色素重编程中的作用.
    • 了解Rpd3如何协调转录关闭和在代谢过渡期间的全球乙化平衡.
    • 阐明HDACs作为代谢门卫的机制.

    主要方法:

    • 对染色体免疫沉降和基因表达的全基因组分析.
    • 涉及缺乏Rpd3或其子单元Pho23.3的酵母突变体的研究.
    • 评估基因素乙化水平 (H3K9ac) 和乙转移酶Gcn5.5的活性.

    主要成果:

    • Rpd3复合体在基因促进体和细胞中调节快速,可逆的基因素脱甲基化,微调转录.
    • Rpd3,特别是Rpd3L复合体,定位在富含H3K9ac和Gcn5.5的活性基因促进体上.
    • 营养物质的转移导致Gcn5脱离和Rpd3介导的脱乙基化,从而强制执行基因抑制.

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    Author Spotlight: An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell Populations
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    Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions
    10:16

    Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions

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    相关实验视频

    Last Updated: Feb 28, 2026

    Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
    10:28

    Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers

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    Author Spotlight: An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell Populations
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    Author Spotlight: An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell Populations

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    Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions
    10:16

    Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions

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  • 失去Rpd3或Pho23会导致饥饿期间持续增长基因表达,以及通过葡萄糖抑制呼吸基因激活.
  • 结论:

    • 在酵母中,Rpd3充当了依赖营养素的染色质重编程的关键调解者.
    • HDACs充当代谢守门员,将营养素的可用性与转录控制相结合.
    • 这种机制确保了代谢过渡期间的转录忠实性,解决了HDAC丰富悖论.