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Integrating Application Programs for Bioinformatics Using a Web Browser.

Ueno, Asai, Arita

    Genome Informatics. Workshop on Genome Informatics
    |November 10, 2000
    PubMed
    Summary
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    This study introduces a framework for controlling applications via a web browser, simplifying network computation and security for diverse private data tasks. It enables easy integration of extension modules for enhanced functionality.

    Area of Science:

    • Computer Science
    • Bioinformatics
    • Software Engineering

    Background:

    • Integrating external control with application programs often requires complex network and security configurations.
    • Existing methods can be cumbersome, demanding specialized knowledge for effective implementation.

    Purpose of the Study:

    • To develop a general framework for seamless integration of application programs with control via a local web browser.
    • To simplify the process of configuring web software for network computations involving private data.

    Main Methods:

    • A novel framework utilizing inter-process messaging between external processes and target applications.
    • Implementation involves a message dispatcher program parsing commands from script files.
    • Dynamic linking supports pluggable extension-modules for enhanced application functionality.

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    Main Results:

    • A prototype system, MOSBY (molecular structure-viewer program), demonstrated successful integration.
    • The framework enabled loading extension-modules for molecular fragment docking studies directly from web pages.
    • Achieved concise web software configuration without deep network computation or security expertise.

    Conclusions:

    • The developed framework offers a simplified approach to web-enabled application control.
    • It is broadly applicable to various network computations, especially those handling sensitive private data.
    • Facilitates user-friendly interaction with complex scientific software through web browsers.