Related Experiment Video
Updated: Aug 16, 2026

Formation of Ordered Biomolecular Structures by the Self-assembly of Short Peptides
Published on: November 21, 2013
Peptides Constrained to Type VI beta-Turns. 1. Evidence for an Exceptionally Stable Intramolecular Hydrogen Bond
Kyonghee Kim1, Juris P. Germanas
1Department of Chemistry, University of Houston, Houston, Texas 77204-5641.
Abstract:
The synthesis and conformational analysis of conjugates of amino acids with a type VI beta-turn dipeptide mimic (1) is described. The mimic possessed high structural similarity to the central two residues of the turn and was constrained from rotation about two of the four single bonds. Coupling of amino acids to the carboxyl group of the mimic afforded conjugates that were capable of forming intramolecular hydrogen bonds. In nonpolar solvents, IR and NMR spectra of the conjugates indicated that the amide hydrogen of the amino acid residue was hydrogen bonded to the carbonyl group of the N-terminal carbamate functionality, as in typical beta-turns. In the hydrogen-bonding solvent DMSO, the intramolecular hydrogen bond was still present, according to the temperature dependence of the chemical shift. The presence of the i, i + 3 hydrogen bond in the conjugates of mimic 1 was substantiated by the spectral properties of conjugates of the isomeric mimic 3, which showed no evidence for the presence of an intramolecular hydrogen bond. The results from these studies suggest that the intramolecularly hydrogen-bonded type VIa turn is an inherently more stable conformation for a peptide than the non-hydrogen-bonded type VIb conformation, in the absence of other structural constraints.
More Related Videos
10:33Development of Inhibitors of Protein-protein Interactions through REPLACE: Application to the Design and Development Non-ATP Competitive CDK Inhibitors
Published on: October 26, 2015
11:09Constructing Thioether/Vinyl Sulfide-tethered Helical Peptides Via Photo-induced Thiol-ene/yne Hydrothiolation
Published on: August 1, 2018
Related Concept Videos
Protein Organization
Protein Folding
Peptide Bonds
Protein and Protein Structure
A protein's shape is critical to its function. For example, an enzyme can...
Protein Organization
The primary structure of a protein is its amino acid sequence.
Protein Folding
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...