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BioEditor-simplifying macromolecular structure annotation.

Peng Yang1, Paul A Craig, David Goodsell

  • 1San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, MC 0505, La Jolla 92093-0505, USA.

Bioinformatics (Oxford, England)
|May 2, 2003
PubMed
Summary
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Scientists can use BioEditor to create molecular structure annotations with text, graphics, and interactive views. This application bridges the gap between print and online formats, aiding structural genomics research.

Area of Science:

  • Structural biology
  • Bioinformatics
  • Scientific visualization

Background:

  • The increasing volume of structural genomics data necessitates advanced tools for annotation and publication.
  • Traditional publication formats struggle to accommodate rich, interactive molecular data.

Purpose of the Study:

  • To introduce BioEditor, a novel application designed for preparing and presenting molecular structure annotations.
  • To facilitate the integration of diverse data types (text, graphics, sequence, interactive views) into scientific publications.

Main Methods:

  • BioEditor integrates formatted text, graphics, sequence data, and interactive molecular visualization capabilities.
  • The application aims to bridge the gap between traditional print journal articles and modern Internet presentation formats.

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Main Results:

  • BioEditor enables scientists and educators to create comprehensive structure annotations.
  • The tool supports the inclusion of interactive molecular views, enhancing data presentation.

Conclusions:

  • BioEditor is a valuable tool for the era of structural genomics, where efficient annotation and publication are critical.
  • The application streamlines the process of structure determination by addressing potential bottlenecks in data presentation.