Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

ActionMap: A web-based software that automates loci assignments to framework maps.

Guillaume Albini1, Matthieu Falque, Johann Joets

  • 1UMR de Génétique Végétale du Moulon, Ferme du Moulon, 91190 Gif-sur-Yvette, France.

Nucleic Acids Research
|June 26, 2003
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Genomic Divergence Shaped the Genetic Regulation of Meiotic Homologous Recombination in Brassica Allopolyploids.

Molecular biology and evolution·2025
Same author

CAYSS: Package for Automatic Cytometry Analysis of Yeast Spore Segregation.

Yeast (Chichester, England)·2025
Same author

Alternating between even and odd ploidy levels switches on and off the recombination control, even near the centromeres.

The Plant cell·2024
Same author

MiniRead: A simple and inexpensive do-it-yourself device for multiple analyses of micro-organism growth kinetics.

Yeast (Chichester, England)·2024
Same author

Quantitative modelling of fine-scale variations in the <i>Arabidopsis thaliana</i> crossover landscape.

Quantitative plant biology·2023
Same author

SeSAM: software for automatic construction of order-robust linkage maps.

BMC bioinformatics·2022
Same journal

Neurochondrin promotes U5 snRNP maturation by regulating AAR2 release from PRPF8.

Nucleic acids research·2026
Same journal

Elongationless start-stop elements are stress-resilient translation gates that are more repressive than uTranslons.

Nucleic acids research·2026
Same journal

Evolution of the ribosomal exit tunnel through the eyes of the nascent chain.

Nucleic acids research·2026
Same journal

Enhancing the performance and interpretability of epigenetic clocks.

Nucleic acids research·2026
Same journal

FABIAN-variant 2026: improved prediction of the effects of DNA variants on transcription factor binding.

Nucleic acids research·2026
Same journal

Structural and biochemical characterization of Grimontia hollisae thermostable direct hemolysin with DNA reveals first Vibrio hemolysin with nuclease activity.

Nucleic acids research·2026
See all related articles

ActionMap software automates genetic mapping by assigning numerous loci to a fixed framework map. This web-based tool streamlines the repetitive computation process for genetic linkage, saving significant time.

Area of Science:

  • Genetics
  • Bioinformatics
  • Computational Biology

Background:

  • Genetic linkage computation is often repetitive and time-consuming, particularly with large numbers of loci.
  • Assigning numerous loci to a framework map presents a significant challenge in genetic analysis.

Purpose of the Study:

  • To develop a web-based software, ActionMap, for automating genetic mapping on a fixed framework map.
  • To streamline the process of assigning numerous loci without altering the existing framework map.

Main Methods:

  • ActionMap utilizes Perl and PHP scripts to automate command-line steps for the MapMaker program.
  • A web interface with forms facilitates data import and the configuration of mapping settings.
  • The software is designed for inbred lines and backcrosses, initially for mapping expressed sequence tags (ESTs) in plant populations.

Related Experiment Videos

Main Results:

  • ActionMap enables the automatic assignment of hundreds of loci to a framework map in a single process.
  • Mapping results can be visualized as tables or drawings and are exportable.
  • Users can manage personal, access-restricted projects for storing data, settings, and results.

Conclusions:

  • ActionMap significantly reduces the time and effort required for genetic linkage computation.
  • The software provides a user-friendly, automated solution for genetic mapping, enhancing efficiency.
  • ActionMap is available online and for free download, promoting wider accessibility in genetic research.