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Sample Preparation to Bioinformatics Analysis of DNA Methylation: Association Strategy for Obesity and Related Trait Studies
Published on: May 6, 2022
A methylation-mediator complex in hormone signaling
Wei Xu1, Helen Cho, Shilpa Kadam
1Howard Hughes Medical Institute, Gene Expression Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Abstract:
The recruitment of coactivators by nuclear hormone receptors (NRs) promotes transcription by subverting chromatin-mediated repression. Although the histone methylation enzyme CARM1 and an ATP-remodeling complex have been individually implicated in nuclear receptor-dependent transcription, neither a functional nor mechanistic linkage between these systems has been identified. In the process of purifying endogenous CARM1-interacting proteins, we identified an associated complex, nucleosomal methylation activator complex (NUMAC), which includes at least eight components of SWI/SNF, including the ATPase BRG1. In the NUMAC complex, the methylase, CARM1, acquires the ability to covalently modify nucleosomal histones, and the directed nucleosome versus free core histone methylation-specificity change is increased dramatically. Reciprocally, CARM1 stimulates the ATPase activity of BRG1, a key component in nucleosome remodeling. In vivo, CARM1 and BRG1 coassemble on an estrogen receptor (ER)-target gene to cooperatively activate ER-dependent transcription. This association of ATP-remodeling factors with HMT CARM1 defines a new component of regulation in the nuclear hormone-signaling pathway.
Insights
Nuclear hormone receptors recruit coactivators to promote transcription. This study identifies a new complex linking the methylase CARM1 and the SWI/SNF remodeling complex, revealing a novel regulatory mechanism in nuclear hormone signaling.
Area of Science:
- Molecular Biology
- Epigenetics
- Gene Regulation
Background:
- Nuclear hormone receptors (NRs) regulate transcription by recruiting coactivators.
- Histone methylation enzymes like CARM1 and ATP-remodeling complexes are individually linked to NR-dependent transcription.
- A functional link between these systems was previously unidentified.
Purpose of the Study:
- To investigate the functional and mechanistic linkage between CARM1 and ATP-remodeling complexes in nuclear receptor signaling.
- To identify and characterize novel coactivator complexes involved in NR-dependent transcription.
Main Methods:
- Purification of endogenous CARM1-interacting proteins.
- Identification of the nucleosomal methylation activator complex (NUMAC) using biochemical approaches.
- In vivo studies examining the coassembly of CARM1 and BRG1 on ER-target genes.
Main Results:
- The nucleosomal methylation activator complex (NUMAC) was identified, containing CARM1 and SWI/SNF components including BRG1.
- CARM1 within NUMAC specifically methylates nucleosomal histones and enhances its activity.
- CARM1 reciprocally stimulates the ATPase activity of BRG1, and they coassemble on ER target genes in vivo.
Conclusions:
- The association of CARM1 with the SWI/SNF ATP-remodeling complex (NUMAC) defines a new regulatory component in nuclear hormone signaling.
- This complex cooperatively activates estrogen receptor-dependent transcription.
- This finding establishes a mechanistic link between histone methylation and nucleosome remodeling in gene activation.
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