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Related Experiment Videos

Genome information resources - developments at Ensembl.

Martin P Hammond1, Ewan Birney

  • 1European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

Trends in Genetics : TIG
|May 18, 2004
PubMed
Summary
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Ensembl enhances genome data access with new features for inter-species comparisons and user data integration. A new data retrieval system, EnsMart, offers fast and flexible access to genomic information.

Area of Science:

  • Bioinformatics
  • Genomics
  • Computational Biology

Background:

  • Genome information resources are crucial for managing and presenting DNA sequence and annotation data.
  • Ensembl is a primary platform for accessing and analyzing genomic data.

Purpose of the Study:

  • To detail recent advancements in the Ensembl system.
  • To highlight new capabilities for data comparison, visualization, and retrieval.

Main Methods:

  • Development of inter-species comparison tools at genomic and protein levels.
  • Enhancements to the display of genetic polymorphism data.
  • Implementation of a fast and flexible data retrieval system, EnsMart.

Main Results:

  • Ensembl now provides integrated inter-species genomic and protein sequence comparisons.

Related Experiment Videos

  • Improved visualization of polymorphism data is available.
  • Users can integrate and display their own data within the Ensembl annotation context.
  • The EnsMart system offers efficient data retrieval.

    • Conclusions:

    • The updated Ensembl system offers significantly enhanced capabilities for genomic research.
    • New features facilitate comparative genomics, polymorphism analysis, and custom data integration.
    • EnsMart provides a powerful tool for accessing and analyzing large-scale genomic datasets.