Related Experiment Video
Updated: Aug 19, 2026

Two- and Three-Dimensional Live Cell Imaging of DNA Damage Response Proteins
Published on: September 28, 2012
Retracted: Nuclear localization and in situ DNA damage by Mycobacterium tuberculosis nucleoside-diphosphate kinase
Adesh Kumar Saini1, Kapil Maithal, Prem Chand
1Dr. B. R. Ambedkar Center for Biomedical Research, University of Delhi, Delhi 110 007, India.
Abstract:
Nucleoside-diphosphate kinase of Mycobacterium tuberculosis (mNdK) is a secretory protein, but the rationale behind secreting an enzyme involved in the maintenance of cellular pool of nucleoside triphosphates is not clearly understood. To elucidate the biological significance of mNdK secretion, we expressed mNdK fused to green fluorescent protein in HeLa and COS-1 cells. Interestingly, mNdK was detected in the nuclei of HeLa and COS-1 cells. Incubation of mNdK with nuclei isolated from HeLa and COS-1 cells led to in situ damage of chromosomal DNA. Surface plasmon resonance studies demonstrated that mNdK binds supercoiled plasmid DNA lacking apurinic/apyrimidinic sites with a dissociation constant of 30 +/- 3.2 mum. Plasmid cleavage by mNdK was found to be dependent on the specific divalent metal ion and inhibited by a metal ion chelator. Moreover, the metal ion-dependent DNA cleavage by mNdK was mediated by superoxide radicals as detected by electron paramagnetic resonance. The cleavage reaction was inhibited under nitrogen atmosphere confirming the necessity of molecular oxygen for DNA cleavage. In view of the findings that mNdK is secreted by intracellular mycobacteria and damages the nuclear DNA, it can be postulated that mNdK may cause cell death that could help in the dissemination of the pathogen.
Insights
Mycobacterium tuberculosis nucleoside-diphosphate kinase (mNdK) is secreted and enters host cell nuclei. This enzyme damages DNA, potentially causing cell death to aid pathogen spread.
Area of Science:
- Microbiology
- Molecular Biology
- Biochemistry
Background:
- Nucleoside-diphosphate kinase (NdK) is crucial for maintaining cellular nucleoside triphosphate pools.
- The secretion of Mycobacterium tuberculosis NdK (mNdK) suggests a role beyond intracellular metabolism.
- The biological significance of mNdK secretion remains unclear.
Purpose of the Study:
- To investigate the biological role and function of the secreted Mycobacterium tuberculosis nucleoside-diphosphate kinase (mNdK).
- To determine the cellular localization and enzymatic activity of mNdK in host cells.
Main Methods:
- Expression of mNdK fused to green fluorescent protein in HeLa and COS-1 cells.
- Detection of mNdK localization using microscopy.
- Assay of mNdK activity on isolated nuclei and plasmid DNA using surface plasmon resonance and electron paramagnetic resonance.
- Investigation of metal ion and oxygen dependency for DNA cleavage.
Main Results:
- mNdK was detected within the nuclei of transfected HeLa and COS-1 cells.
- mNdK induced in situ damage to chromosomal DNA.
- mNdK binds supercoiled plasmid DNA and cleaves it in a metal ion-dependent manner.
- DNA cleavage is mediated by superoxide radicals and requires molecular oxygen.
Conclusions:
- Secreted mNdK localizes to host cell nuclei and possesses DNA damaging capabilities.
- The DNA-damaging activity of mNdK, potentially involving superoxide radicals, suggests a mechanism for host cell manipulation.
- mNdK may contribute to Mycobacterium tuberculosis pathogenesis by inducing host cell death, facilitating pathogen dissemination.
Related Concept Videos
Nucleotide Excision Repair
Translesion DNA Polymerases
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
DNA Damage can Stall the Cell Cycle
Restarting Stalled Replication Forks
Nucleotide Excision Repair
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
DNA Damage Can Stall the Cell Cycle

