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Automatic alignment of individual peaks in large high-resolution spectral data sets
Radka Stoyanova1, Andrew W Nicholls, Jeremy K Nicholson
1Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA. Radka.Stoyanova@fccc.edu
Journal of Magnetic Resonance (San Diego, Calif. : 1997)
|September 25, 2004
Summary
This study introduces an automatic method to align spectral peaks in large datasets, improving pattern recognition for metabonomics. This technique addresses variations that obscure metabolic profile analysis in biofluids like urine.
Area of Science:
- Analytical Chemistry
- Biochemistry
- Chemometrics
Background:
- Pattern recognition simplifies large spectral datasets for chemical and biochemical analysis.
- Experimental variations like peak shifts hinder accurate interpretation of spectral data.
- Metabonomics, analyzing metabolic profiles from biofluid spectra (e.g., urine), is significantly impacted by these variations.
Purpose of the Study:
- To develop and evaluate an automatic procedure for aligning spectral peaks.
- To overcome limitations in pattern discovery caused by experimental and instrument-induced spectral variations.
- To facilitate efficient and automated analysis of large metabonomic datasets.
Main Methods:
- Development of an automatic peak alignment algorithm.
- Evaluation of the procedure's effectiveness on spectral data.
- Application to (1)H NMR spectra of biofluids for metabonomic analysis.
Main Results:
- The proposed method effectively aligns individual peaks within spectral datasets.
- Automatic alignment significantly improves the reliability of pattern discovery in complex data.
- The procedure addresses dominant sources of variation, such as frequency shifts in NMR spectra.
Conclusions:
- The developed automatic peak alignment procedure is vital for efficient metabonomic data analysis.
- This method enhances the utility of pattern recognition in large spectral datasets.
- The technique shows potential applicability to diverse data types beyond metabonomics.