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Updated: Aug 18, 2026

Gastric Mucosa Quantitative Polymerase Chain Reaction Analysis for Detecting Helicobacter pylori and Antibiotic Resistance
Published on: March 7, 2025
Antibiotic-resistant Helicobacter pylori strains in Portuguese children
Ana Isabel Lopes1, Mónica Oleastro, Ana Palha
1Unit of Pediatric Gastroenterology and Nutrition, Department of Pediatrics, INSA, Lisbon, Portugal. rop85873@mail.telepac.pt
Insights
High antibiotic resistance in pediatric Helicobacter pylori strains was observed. Susceptibility-based treatment showed a modest eradication rate, highlighting the need for further studies and surveillance.
Area of Science:
- Pediatric infectious diseases
- Microbiology
- Clinical pharmacology
Background:
- Limited data exists on the effectiveness of Helicobacter pylori (H. pylori) eradication regimens guided by antibiotic susceptibility testing in children.
- Antibiotic resistance in H. pylori poses a significant challenge to effective treatment in pediatric populations.
Purpose of the Study:
- To determine the prevalence of antibiotic resistance in H. pylori strains from Portuguese children (1999-2003).
- To assess the eradication rate of H. pylori using treatments tailored by antibiotic susceptibility testing.
- To identify factors linked to antibiotic resistance and treatment outcomes in children.
Main Methods:
- Analysis of H. pylori strains from gastric biopsies of 109 children.
- Antibiotic susceptibility testing (E test) to guide first-line treatment with amoxicillin, omeprazole, and either clarithromycin or metronidazole.
- Eradication assessment using the [C]urea breath test.
Main Results:
- High resistance rates were found: 39.4% to clarithromycin, 16.5% to metronidazole, and 4.5% to ciprofloxacin. Strains remained susceptible to amoxicillin and tetracycline.
- Clarithromycin resistance was associated with European origin, prior H. pylori empiric therapy, and amoxicillin minimal inhibitory concentration.
- The susceptibility-based treatment achieved a 74.7% eradication rate, with failure linked to resistance to one or more antibiotics.
Conclusions:
- The study revealed a high prevalence of H. pylori antibiotic resistance in the pediatric cohort.
- The moderate success of susceptibility-guided clarithromycin and metronidazole regimens suggests other factors influence treatment outcomes.
- Emphasizes the necessity for susceptibility-based treatment studies in children and ongoing antimicrobial resistance surveillance for H. pylori.
Background:
Data concerning the effectiveness of Helicobacter pylori eradication regimens based in antibiotic susceptibility testing are scanty in children.
Aims:
To identify the prevalence of antibiotic resistance in H. pylori strains isolated from Portuguese children in 1999-2003; to evaluate eradication rate after antibiotic susceptibility testing-based treatment; and to identify factors associated with resistance and eradication outcome.
Methods:
Included were 109 children with a gastric biopsy culture positive for H. pylori. First treatment (amoxicillin, omeprazole and clarithromycin or metronidazole) was guided by susceptibility testing (E test), and eradication was assessed by [C]urea breath test.
Results:
Strains were susceptible to amoxicillin and tetracycline; 39.4% were resistant to clarithromycin, 16.5% to metronidazole and 4.5% to ciprofloxacin. No significant association was found between resistance and sex, age, clinical status, gastritis scores, H. pylori density scores and genotype. Clarithromycin resistance was significantly associated with European origin [odds ratio (OR), 3.9], previous H. pylori empiric therapy (OR 2.8) and amoxicillin minimal inhibitory concentration, > or =0.016 (OR 6.0). Eradication rate after susceptibility-based treatment was 74.7% (59 of 79; 95% confidence interval, 65.9-82.9), and a significant association was found between eradication failure and presence of resistance to 1 or more antibiotics (P < 0.05).
Conclusions:
The prevalence of H. pylori antibiotic resistance was high in the studied population. The modest therapeutic success of clarithromycin and metronidazole susceptibility-based regimens suggests that in addition to resistance, other factors may be involved. The need of susceptibility-based treatment studies in children and of antimicrobial resistance surveillance in high prevalence areas for H. pylori are emphasized.
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