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Updated: May 27, 2026

An Allele-specific Gene Expression Assay to Test the Functional Basis of Genetic Associations
Published on: November 3, 2010
A polymorphism in the PDLIM5 gene associated with gene expression and schizophrenia
Yasue Horiuchi1, Makoto Arai, Kazuhiro Niizato
1Department of Medical Genetics, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
Genetic variations in the PDZ and LIM domain 5 gene (PDLIM5) are linked to schizophrenia. These PDLIM5 polymorphisms affect gene expression and may contribute to the genetic risk of developing schizophrenia.
Area of Science:
- Neurogenetics
- Molecular Psychiatry
Background:
- Elevated PDZ and LIM domain 5 gene (PDLIM5) expression observed in postmortem brains of schizophrenia patients.
- Previous studies indicated increased PDLIM5 expression in schizophrenia.
Purpose of the Study:
- To investigate the association between PDLIM5 gene polymorphisms and schizophrenia.
- To determine if identified PDLIM5 polymorphisms influence gene expression and nuclear protein binding.
Main Methods:
- Screening for PDLIM5 mutations in Japanese schizophrenia patients.
- Case-control association study in a Japanese population (278 patients, 462 controls).
- Real-time quantitative PCR for PDLIM5 expression analysis and Electrophoretic mobility shift assay (EMSA) for protein binding.
Main Results:
- Twenty-seven PDLIM5 polymorphisms identified; two (rs2433320, rs2433322) in the 5' region associated with schizophrenia (p = .004).
- These polymorphisms significantly influenced PDLIM5 gene expression (p = .007).
- EMSA demonstrated differential nuclear protein binding for the rs2433320 polymorphism alleles.
Conclusions:
- PDLIM5 gene polymorphisms are associated with schizophrenia.
- The findings suggest PDLIM5 plays a role in the genetic susceptibility to schizophrenia.
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