Self-assembly and odd-even effects of cis-unsaturated carboxylic acids on highly oriented pyrolytic graphite

The self-assembly of several cis-unsaturated carboxylic acids of the structure cis-CH3(CH2)p-1CH=CH(CH2)m-1COOH on highly oriented pyrolytic graphite (HOPG) was studied. The impact of the interior cis-CH=CH group and the molecular chain length on their self-assembled structures was considered. Due to the cis conformation of the -HC=CH- group in the interior of these molecules, they display self-assembled structures significantly different from saturated acids with all-trans configurations. As an example of the class of molecules cis-CH3(CH2)p-1CH=CH(CH2)2n-1COOH (p not equal 2n) (p=8, n=7), cis-CH3(CH2)7CH=CH(CH2)13COOH self-assembles into two kinds of enantiomer domains with opposite 2-D chirality. Due to the steric restriction of the interior cis-HC=CH group, all chains with acid groups are packed at the same side of a lamella, a head-to-head arrangement which is different from the head-to-tail packing of saturated all-trans acids. However, cis-CH3(CH2)7CH=CH(CH2)8COOH, considered as one example of the group cis-CH3(CH2)p-1CH=CH(CH2)2n-2COOH (p not equal 2n-1) (p=8, n=5), does not form any stable self-assembled domain, consistent with the molecular arrangement model. This difference in self-assembly behavior between cis-CH3(CH2)p-1CH=CH(CH2)2n-1COOH (p not equal 2n) and cis-CH3(CH2)p-1CH=CHC2n-2COOH (p not equal 2n-1) shows an odd-even chain-length effect of cis-CH3(CH2)p-1CH=CH(CH2)m-1COOH (p not equal m, m=2n or 2n-1). For another category of molecules, cis-unsaturated acids with equal numbers of all-trans carbon atoms on both sides of the cis-CH=CH group, cis-CH3(CH2)m-1CH=CH(CH2)m-1COOH (m=2n or 2n-1), display another odd-even effect. cis-CH3(CH2)7CH=CH(CH2)7COOH, one example of cis-CH3(CH2)2n-1-CH=CH(CH2)2n-1COOH (n=4), is predicted to form both an enantiomer and a nonchiral racemic structure, which is in accordance with the experimental observation of its self-assembled monolayer. However, cis-CH3(CH2)2n-2CH=CH(CH2)2n-2COOH does not form a stable self-assembled domain due to the same steric repulsion as that seen in the cis-CH3(CH2)7CH=CH(CH2)8COOH structure. These odd-even effects demonstrate that molecular self-assembly can be significantly tailored by slightly changing the molecular chain length.