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Updated: Jul 10, 2026

Peptide Scanning-assisted Identification of a Monoclonal Antibody-recognized Linear B-cell Epitope
Published on: March 24, 2017
Plasma membrane-porating domain in poliovirus 2B protein. A short peptide mimics viroporin activity
Vanesa Madan1, Silvia Sánchez-Martínez, Natascia Vedovato
1Centro de Biología Molecular (CSIC-UAM), Universidad Autónoma de Madrid, Canto Blanco, 28049 Madrid, Spain.
Abstract:
Picornavirus 2B, a non-structural protein required for effective viral replication, has been implicated in cell membrane permeabilization during the late phases of infection. Here, we have approached the molecular mechanism of this process by assessing the pore-forming activity of an overlapping peptide library that spanned the complete 2B sequence. At non-cytopathic concentrations, only the P3 peptide, spanning 2B residues 35-55, effectively assembled hydrophilic pores that allowed diffusion of low molecular mass solutes across the cell plasma membrane (IC(50) approximately 4x10(-7) M) and boundary liposome bilayers (starting at peptide to lipid molar ratios>1:10(4)). Circular dichroism data were consistent with its capacity to fold as a helix in a membrane-like environment. Furthermore, addition of this peptide to a sealed plasma-membrane model, consisting of retinal rod outer segments patch-clamped in a whole-cell configuration, induced ion channel activity within seconds at concentrations as low as 10(-8) M. Thus, we have established a "one-helix" 2B version that possesses the intrinsic pore-forming activity required to directly and effectively permeabilize the cell plasma membrane. We conclude that 2B viroporin can be classified as a genuine pore-forming toxin of viral origin, which is produced intracellularly at certain times post infection.
Insights
Picornavirus 2B protein forms pores in cell membranes, enabling viral replication. A specific peptide (P3) from this protein directly permeabilizes membranes, acting as a viral toxin.
Area of Science:
- Virology
- Molecular Biology
- Membrane Biophysics
Background:
- Picornavirus 2B protein is crucial for viral replication.
- It is known to cause cell membrane permeabilization during infection.
Purpose of the Study:
- To investigate the molecular mechanism of picornavirus 2B-induced cell membrane permeabilization.
- To identify specific regions of the 2B protein responsible for pore-forming activity.
Main Methods:
- Screening of an overlapping peptide library spanning the 2B protein sequence.
- Assessing pore-forming activity using liposome bilayers and cell-based assays (patch-clamp electrophysiology).
- Circular dichroism spectroscopy to determine peptide secondary structure in membrane-like environments.
Main Results:
- A single peptide (P3, residues 35-55) demonstrated significant pore-forming activity at non-cytopathic concentrations.
- P3 peptide induced solute diffusion across liposome and cell membranes.
- Circular dichroism confirmed P3 peptide's helical structure in lipidic environments.
- Patch-clamp experiments showed P3 peptide rapidly induced ion channel activity.
Conclusions:
- The P3 peptide represents a minimal, single-helix functional unit of the 2B viroporin.
- Picornavirus 2B protein acts as a genuine pore-forming toxin of viral origin.
- This mechanism directly contributes to cell membrane permeabilization during picornavirus infection.
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