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AtEnsEMBL.

Nick James1, Neil Graham, Debbie Clements

  • 1Nottingham Arabidopsis Stock Centre, School of Biosciences, Universsity of Nottingham, Loughborough, UK.

Methods in Molecular Biology (Clifton, N.J.)
|February 22, 2008
PubMed
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A new Arabidopsis genomic resource, AtEnsembl, offers a user-friendly interface for accessing plant genomic data. This resource supports researchers with gene information, expression data, and germplasm links.

Area of Science:

  • Plant genomics
  • Bioinformatics
  • Arabidopsis thaliana research

Background:

  • The Nottingham Arabidopsis Stock Centre (NASC) supports the international plant research community.
  • Access to comprehensive genomic information is crucial for advancing plant science.

Purpose of the Study:

  • To develop a comprehensive Arabidopsis genomic resource.
  • To provide a user-friendly interface for accessing genomic and post-genomic data.
  • To integrate diverse data types including germplasm, gene/protein information, and gene expression data.

Main Methods:

  • Development of the AtEnsembl browser.
  • Integration of Ensembl browser features.
  • Inclusion of links to germplasm, gene and protein data, and Affymetrix gene expression data.

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  • Implementation of data download capabilities.

    • Main Results:

    • A comprehensive and user-friendly Arabidopsis genomic resource, AtEnsembl, has been established.
    • The resource provides access to a wide range of Arabidopsis genomic information.
    • Features include gene/protein data, germplasm pointers, and gene expression data links.

    Conclusions:

    • AtEnsembl serves as a valuable resource for the international plant community.
    • The integrated platform facilitates access to diverse Arabidopsis research data.
    • This resource enhances research capabilities in plant genomics and post-genomics.