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Updated: Jul 5, 2026

Strand-Specific Analysis of Proteins at Replicating DNA Strands by Enrichment and Sequencing of Protein-Associated Nascent DNA Method
Published on: May 2, 2025
Division of labor at the eukaryotic replication fork.
Stephanie A Nick McElhinny1, Dmitry A Gordenin, Carrie M Stith
1Laboratory of Molecular Genetics, National Institute of Environmental Health Sciences, NIH, DHHS, Research Triangle Park, NC 27709, USA.
DNA polymerase delta (Pol delta) primarily replicates the lagging strand, while DNA polymerase epsilon (Pol epsilon) handles the leading strand during nuclear genome replication in yeast.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- DNA polymerases delta (Pol delta) and epsilon (Pol epsilon) are essential for nuclear genome replication.
- The specific roles of Pol delta and Pol epsilon in replicating leading vs. lagging DNA strands remain largely undetermined.
Purpose of the Study:
- To elucidate the distinct contributions of Pol delta and Pol epsilon to DNA replication.
- To determine the proportion of lagging strand synthesis attributable to Pol delta in Saccharomyces cerevisiae.
Main Methods:
- Utilized a mutant Pol delta allele (pol3-L612M) with a characterized strand-specific error rate.
- Analyzed strand-specific mutation rates in a reporter gene relative to replication origin orientation.
- Integrated findings with existing data on Pol epsilon's role in leading strand replication.
Main Results:
- Strand-specific mutation rates were highly dependent on reporter gene orientation relative to the replication origin.
- Evidence suggests Pol delta is responsible for over 90% of replication using the lagging strand template.
- The data strongly implicate Pol epsilon in leading strand replication.
Conclusions:
- The study supports a model where Pol epsilon primarily replicates the leading strand template.
- Pol delta is predominantly involved in replicating the lagging strand template.
- This division of labor clarifies the functional roles of key DNA polymerases in eukaryotic replication.
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