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Updated: Jul 4, 2026

A Manual Small Molecule Screen Approaching High-throughput Using Zebrafish Embryos
07:45

A Manual Small Molecule Screen Approaching High-throughput Using Zebrafish Embryos

Published on: November 8, 2014

FishMap: a community resource for zebrafish genomics.

Rajeshwari Meli1, Abhiranjan Prasad, Ashok Patowary

  • 1Institute of Genomics and Integrative Biology, Council of Scientific and Industrial Research, Delhi, India.

Zebrafish
|June 17, 2008
PubMed
Summary
This summary is machine-generated.

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FishMap provides a unified platform for zebrafish genomics data, integrating scattered information for better understanding of biological processes. This resource aids researchers studying zebrafish (Danio rerio) and human diseases.

Area of Science:

  • Genomics
  • Bioinformatics
  • Zebrafish (Danio rerio) model organism research

Background:

  • Extensive genomic data exists for zebrafish (Danio rerio), a key model organism for human diseases.
  • This valuable zebrafish genomic information is currently fragmented across numerous obscure data sources.
  • Limited integrated platforms exist for accessing and analyzing this scattered zebrafish data.

Purpose of the Study:

  • To develop FishMap, a unified and centralized resource for zebrafish genomic information.
  • To consolidate, store, retrieve, and display genomic data for zebrafish (Danio rerio).
  • To facilitate a better understanding of biological processes in zebrafish through integrated data access.

Main Methods:

  • Methodically collected genomic datasets from diverse resources and publications.

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Related Experiment Videos

Last Updated: Jul 4, 2026

A Manual Small Molecule Screen Approaching High-throughput Using Zebrafish Embryos
07:45

A Manual Small Molecule Screen Approaching High-throughput Using Zebrafish Embryos

Published on: November 8, 2014

High-throughput DNA Extraction and Genotyping of 3dpf Zebrafish Larvae by Fin Clipping
10:12

High-throughput DNA Extraction and Genotyping of 3dpf Zebrafish Larvae by Fin Clipping

Published on: June 29, 2018

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11:42

Sample Preparation and Analysis of RNASeq-based Gene Expression Data from Zebrafish

Published on: October 27, 2017

  • Mapped all collected data to the zebrafish genome.
  • Organized data into nine sections including comparative genomics, gene predictions, expression, regulation, variation, and novel tracks like noncoding gene annotation and retrovirus integrations.

    • Main Results:

    • FishMap offers a centralized repository for zebrafish genomic data, including comparative genomics, gene predictions, expression, and variation.
    • Unique features include tracks for noncoding gene annotation, retrovirus/transposon locations, and novel transcripts.
    • Integrated features include a Web-based BLAST server and a gene ID converter for enhanced usability.

    Conclusions:

    • FishMap serves as a comprehensive, integrated resource for zebrafish genomics.
    • The platform supports programmatic access via Distributed Annotation System and BioMoby protocols.
    • FishMap aims to be an integral resource for the research community, supporting zebrafish genomics research and data mining workflows.