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Updated: Jul 4, 2026

Optical Photothermal Infrared-Fluorescence In Situ Hybridization (OPTIR-FISH)
Published on: February 23, 2024
The use of NIR as a multi-parametric in situ monitoring technique in filamentous fermentation systems
Licínia O Rodrigues1, Luís Vieira, Joaquim P Cardoso
1Institute of Biotechnology & Bioengineering, IST, Centre for Biological and Chemical Engineering, Technical University of Lisbon, Av. Rovisco Pais, P-1049-001 Lisbon, Portugal. bsel@ist.utl.pt
Abstract:
The use of Fourier transform near infrared (FT-NIR) spectroscopy for simultaneous determination of multiple properties in an active pharmaceutical ingredient (API) fermentation process is described, together with procedures for developing accurate NIR calibrations with a performance independent of scale and the specific bioreactor used. Measurements were made in situ, by insertion of transflection probes into pilot and industrial bioreactors providing direct contact with the fermentation culture media. The ultimate goal was to establish methods for real time process monitoring aimed at enhanced process supervision, fault detection diagnosis and control of bioreactors. The in situ acquired spectra were related to lab results of samples taken from the reactors during the course of the manufacturing process. Suitable spectral wavenumber regions were selected and calibration models based on partial least squares (PLS) were developed. The root mean square errors of prediction for API content, viscosity, nitrogen source and carbon source concentration were all within acceptable ranges as compared to the off-line lab measurements, respectively, 0.03% (w/w), 150 cp, 0.01% (w/w), and 0.4% (w/w).
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