Would SNOMED CT benefit from realism-based ontology evolution?
Werner M Ceusters1, Kent A Spackman, Barry Smith
1Center of Excellence in Bioinformatics & Life Sciences, University at Buffalo, NY, USA.
AMIA ... Annual Symposium Proceedings. AMIA Symposium
|August 13, 2008
Summary
Ensuring comparability across SNOMED CT versions requires a robust history mechanism. Current SNOMED CT history partially distinguishes real-world changes from evolving understanding, necessitating improvements for accurate biomedical information management.
Area of Science:
- Medical Informatics
- Biomedical Terminology
- Information Science
Background:
- SNOMED CT is a critical biomedical reference terminology.
- Maintaining information comparability across SNOMED CT versions is essential.
- A history mechanism is included in new SNOMED CT releases to manage version changes.
Purpose of the Study:
- To assess the adequacy of the SNOMED CT history mechanism.
- To evaluate how the mechanism handles the distinction between real-world entity changes and changes in understanding.
- To identify areas for improvement in SNOMED CT version comparability.
Main Methods:
- Analysis of the SNOMED CT history mechanism's treatment of version changes.
- Evaluation of the distinction between changes in reality and changes in conceptual understanding.
- Identification of limitations in the current historical representation.
Main Results:
- The current SNOMED CT history mechanism only partially distinguishes between changes in real-world entities and changes in understanding.
- Limitations were identified in the explicit representation of class provenance.
- The separation of validity periods (SNOMED CT vs. reality) and the historical relationships table require enhancement.
Conclusions:
- The SNOMED CT history mechanism needs improvement to ensure accurate information comparability across versions.
- Recommendations include explicit provenance representation, separation of validity timelines, and redesigning historical relationship tables.
- Further study is required to develop clear enhancement proposals for better error recovery and data integrity.
Related Concept Videos
Natural and Artificial Concepts
In psychology, concepts can be divided into two categories: natural and artificial. Natural concepts are formed through direct or indirect experiences. For example, consider the concept of snow. If you live in a place with regular snowfall, such as Essex Junction, Vermont, you know snow through direct experiences. You’ve seen it fall, touched it, shoveled it, and played in it. You recognize its texture, appearance, and even its smell. In contrast, if you live on an island like Saint Vincent in...
Modeling and Similitude
Scaled modeling is a fundamental technique in engineering, enabling the study of large and complex systems by creating smaller, manageable replicas that recreate critical characteristics of the original. In hydrology and civil infrastructure, for example, scaled models of dams help analyze water flow, turbulence, and pressure. This method allows for accurate predictions of real-world behavior within a controlled environment, significantly reducing the cost and time involved in full-scale...
Cognitivism
Cognitive psychology emerged as a significant field in the mid-20th century. It focused on understanding humans' internal mental processes. This approach emphasizes how people perceive, remember, think, and solve problems—elements critical to human cognition.
Previously dominated by behaviorism, which prioritized observable behaviors and largely ignored mental processes, psychology transformed in the 1950s. Cognitive psychologists argue that understanding how we think and process information is...
Previously dominated by behaviorism, which prioritized observable behaviors and largely ignored mental processes, psychology transformed in the 1950s. Cognitive psychologists argue that understanding how we think and process information is...
Impact of Schemas
Schemas are cognitive structures that provide a framework for interpreting and organizing social information. They help individuals navigate complex environments by offering expectations about people, events, and behaviors. Schemas influence attention, encoding, and retrieval processes, thereby shaping the entire trajectory of information processing in social contexts.Attention and Cognitive LoadDuring initial attention, schemas function as filters that prioritize schema-consistent information,...
Stereotype Content Model
The Stereotype Content Model (SCM) was first proposed by Susan Fiske and her colleagues (Fiske, Cuddy, Glick & Xu, 2002; see also Fiske, 2012 and Fiske, 2017). The SCM specifies that when someone encounters a new group, they will stereotype them based on two metrics: warmth—or that group’s perceived intent, and how likely they are to provide help or inflict harm—and competence—or their ability to carry out that objective. Depending on the warmth-competence categorization, a person will feel...
Synteny and Evolution
John H. Renwick first coined the term “synteny” in 1971, which refers to the genes present on the same chromosomes, even if they are not genetically linked. The species with common ancestry tend to show conserved syntenic regions. Therefore, the concept of synteny is nowadays used to describe the evolutionary relationship between species.
Around 80 million years ago, the human and mice lineages diverged from the common ancestor. During the course of evolution, the ancestral chromosome underwent...
Around 80 million years ago, the human and mice lineages diverged from the common ancestor. During the course of evolution, the ancestral chromosome underwent...

