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Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
Published on: July 25, 2013
Structure-guided inhibitor design for human FAAH by interspecies active site conversion
Mauro Mileni1, Douglas S Johnson, Zhigang Wang
1The Skaggs Institute for Chemical Biology, La Jolla, CA 92037, USA.
Fatty acid amide hydrolase (FAAH) is a therapeutic target for pain and anxiety. Researchers created a humanized rat FAAH enzyme for structural studies, enabling the design of selective inhibitors.
Area of Science:
- Biochemistry
- Enzymology
- Structural Biology
Background:
- Fatty acid amide hydrolase (FAAH) is an integral membrane enzyme that hydrolyzes endocannabinoids like anandamide.
- Inhibition of FAAH offers therapeutic potential for analgesia, anxiolysis, and anti-inflammatory effects without direct cannabinoid receptor agonist side effects.
- Structure-based design of FAAH inhibitors is hindered by challenges in expressing the human enzyme.
Purpose of the Study:
- To overcome expression difficulties for human fatty acid amide hydrolase (FAAH).
- To generate a stable, high-yield FAAH enzyme suitable for structural studies and inhibitor design.
- To elucidate the structural basis for species selectivity in FAAH inhibition.
Main Methods:
- Site-directed mutagenesis was used to interconvert active sites of rat and human FAAH.
- A humanized rat FAAH (h/rFAAH) protein was engineered.
- Crystallography was employed to determine the structure of h/rFAAH complexed with the inhibitor PF-750.
Main Results:
- The engineered h/rFAAH protein demonstrated inhibitor sensitivity profiles similar to human FAAH while maintaining high expression yields.
- A 2.75-Å crystal structure of the h/rFAAH-PF-750 complex was obtained.
- The structure provided insights into the species selectivity of FAAH inhibitors, particularly the strong preference for human FAAH.
Conclusions:
- The humanized rat FAAH enzyme facilitates structure-based inhibitor design.
- The crystal structure reveals key interactions explaining inhibitor selectivity.
- This work guides the development of novel therapeutics targeting FAAH.
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