Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Modified Boxplots00:57

Modified Boxplots

A standard box and whisker plot informs us about the spread of the data in a given sample. One can identify the minimum value, maximum value, first quartile value, second quartile or median value, and third quartile.
However, the box plot does not tell the reader about outliers - values that lie far from the center of the data. We can modify the standard box and whisker plot to identify the outliers and visualize the actual spread of the data in a sample.
Initially, we calculate the adjusted...
Statgraphics01:10

Statgraphics

Statgraphics is a comprehensive statistical software suite designed for both basic and advanced data analysis. Originating in 1980 at Princeton University under Dr. Neil W. Polhemus, it was one of the pioneering tools for statistical computing on personal computers, with its public release in 1982 marking an early milestone in data science software. Over the years, it has evolved into a robust platform for data science, offering tools for regression analysis, ANOVA, multivariate statistics,...
Drawing Free-body Diagrams: Rules01:16

Drawing Free-body Diagrams: Rules

The first step in describing and analyzing most phenomena in physics involves the careful drawing of a free-body diagram. Free-body diagrams are useful in analyzing forces acting on an object or system, and are employed extensively in the study and application of Newton's laws of motion. The steps to draw a free-body diagram are listed below:
Overview of Minitab01:11

Overview of Minitab

Minitab is a statistical software package designed for data analysis. With its origins in the 1970s and development at Pennsylvania State University, Minitab has grown significantly in its capabilities and applications. It plays a crucial role in quality management projects, especially in Six Sigma initiatives, by offering tools for process improvement and statistical analysis. Minitab's significance lies in its user-friendly interface, making complex statistical analysis accessible to users...
Energy Diagrams - II01:10

Energy Diagrams - II

Energy diagrams are important to understand the dynamics of a system. The topology of an energy diagram helps illustrate the equilibrium points of the system.
The point in the energy diagram at which the system’s potential energy is the lowest is known as the local minima. The system tends to stay in this position indefinitely unless acted upon by a net force. The slope of the potential energy diagram at the local minima is zero, indicating that zero net force is acting on the system. The slope...
Molecular Shapes01:18

Molecular Shapes

Molecules have characteristic shapes that are crucial for their function. The arrangement of various electron groups around the central atom dictates their molecular geometry. Electron pairs in the valence shell of a central atom will adopt an arrangement that minimizes repulsions between the electron pairs by maximizing the distance between them. The valence electrons form either bonding pairs, located primarily between bonded atoms, or lone pairs.Two regions of electron density in a diatomic...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Long-term protection following a primary series of hepatitis B vaccine in Alaska Native children and adults.

Hepatology communications·2026
Same author

Visualizing and teaching crystallographic symmetry using Jmol.

Acta crystallographica. Section C, Structural chemistry·2026
Same author

Changes in liver stiffness measurements following hepatitis C sustained virologic response among Alaska Native adults treated with sofosbuvir-based direct acting anti-viral therapy.

International journal of circumpolar health·2025
Same author

Standardising HBV nomenclature: a call to action from the HBV Forum.

The lancet. Gastroenterology & hepatology·2025
Same author

The use of TENS for the treatment of back pain in the emergency department: A randomized controlled trial.

Academic emergency medicine : official journal of the Society for Academic Emergency Medicine·2025
Same author

Free tools for crystallographic symmetry handling and visualization.

Journal of applied crystallography·2024
Same journal

Quantitative analysis of light-induced ion segregation in mixed-halide perovskites.

Journal of applied crystallography·2026
Same journal

Towards machine-learning-based on-the-fly analysis of neutron reflectometry.

Journal of applied crystallography·2026
Same journal

<i>mcstas_gisans</i>: combining ray tracing with the distorted-wave Born approximation using <i>McStas</i> and <i>BornAgain</i> for virtual GISANS experiments.

Journal of applied crystallography·2026
Same journal

Computational methods for automated center determination in electron diffraction patterns.

Journal of applied crystallography·2026
Same journal

Epitaxy of ultrathin Fe<sub>3</sub>O<sub>4</sub> films on SrTiO<sub>3</sub>(001): influence of growth parameters on the formation of coexisting (111)- and (001)-oriented phases.

Journal of applied crystallography·2026
Same journal

Spin excitations near the pressure-induced antiferromagnetic transition in SrCu<sub>2</sub>(BO<sub>3</sub>)<sub>2</sub>.

Journal of applied crystallography·2026
See all related articles

Related Experiment Video

Updated: Jun 23, 2026

A Rapid, Simple Workflow for Quantification of External Adult Drosophila Structures
08:55

A Rapid, Simple Workflow for Quantification of External Adult Drosophila Structures

Published on: November 8, 2024

A toolkit for publishing enhanced figures.

Brian McMahon, Robert M Hanson

    Journal of Applied Crystallography
    |May 23, 2009
    PubMed
    Summary
    This summary is machine-generated.

    Authors can now create interactive crystallography figures using a new toolkit. This tool enhances Jmol visualization for web publication, simplifying graphics manipulation and data management.

    More Related Videos

    Visualizing Oceanographic Data to Depict Long-term Changes in Phytoplankton
    08:15

    Visualizing Oceanographic Data to Depict Long-term Changes in Phytoplankton

    Published on: July 28, 2023

    Three and Four-Dimensional Visualization and Analysis Approaches to Study Vertebrate Axial Elongation and Segmentation
    12:59

    Three and Four-Dimensional Visualization and Analysis Approaches to Study Vertebrate Axial Elongation and Segmentation

    Published on: February 28, 2021

    Related Experiment Videos

    Last Updated: Jun 23, 2026

    A Rapid, Simple Workflow for Quantification of External Adult Drosophila Structures
    08:55

    A Rapid, Simple Workflow for Quantification of External Adult Drosophila Structures

    Published on: November 8, 2024

    Visualizing Oceanographic Data to Depict Long-term Changes in Phytoplankton
    08:15

    Visualizing Oceanographic Data to Depict Long-term Changes in Phytoplankton

    Published on: July 28, 2023

    Three and Four-Dimensional Visualization and Analysis Approaches to Study Vertebrate Axial Elongation and Segmentation
    12:59

    Three and Four-Dimensional Visualization and Analysis Approaches to Study Vertebrate Axial Elongation and Segmentation

    Published on: February 28, 2021

    Area of Science:

    • Crystallography
    • Scientific Visualization
    • Digital Publishing

    Background:

    • Traditional figures in crystallography publications lack interactivity.
    • Enhancing figures can improve data comprehension and engagement.
    • Existing tools for creating interactive figures are often complex.

    Purpose of the Study:

    • To develop a user-friendly toolkit for creating interactive figures for crystallography journals.
    • To integrate Jmol, a Java-based visualization engine, for dynamic figure manipulation.
    • To enable persistent storage of graphics states, scripts, and data files.

    Main Methods:

    • Development of an editing toolkit with user-friendly widgets.
    • Integration of the Jmol visualization engine as a web browser applet.
    • Implementation of persistent storage for graphics state, scripts, and data.

    Main Results:

    • A functional toolkit enabling authors to create enhanced interactive figures.
    • Simplified manipulation of Jmol graphics states through intuitive widgets.
    • Secure and persistent storage of all figure-related components.

    Conclusions:

    • The developed toolkit significantly enhances the publication process in crystallography.
    • Interactive figures improve the presentation and accessibility of crystallographic data.
    • The toolkit offers a streamlined approach to creating dynamic scientific visualizations.