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Related Concept Videos

DNA Isolation01:24

DNA Isolation

DNA isolation protocols can be fast and straightforward or complex and time-consuming depending on the type and quality of DNA required for further processing. For example, plasmid DNA extraction is a bit more complicated than genomic DNA extraction because of the need for an appropriate lysis method to separate plasmid DNA from gDNA during isolation. However, for specific applications, such as long-range DNA sequencing that require a good yield of high- quality DNA samples, we need to follow...

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Electricity-Free, Sequential Nucleic Acid and Protein Isolation
09:52

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Published on: May 15, 2012

Automated nucleic acids isolation using paramagnetic microparticles coupled with electrochemical detection.

Dalibor Huska1, Jaromir Hubalek, Vojtech Adam

  • 1Department of Chemistry and Biochemistry, Mendel University of Agriculture and Forestry, Zemedelska 1, CZ-613 00 Brno, Czech Republic.

Talanta
|June 30, 2009
PubMed
Summary

This study presents an efficient method for isolating messenger RNA (mRNA) using paramagnetic microparticles and electrochemical detection. The optimized technique achieves high yields and can be automated for rapid analysis of biological samples.

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High-throughput, Automated Extraction of DNA and RNA from Clinical Samples using TruTip Technology on Common Liquid Handling Robots
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High-throughput, Automated Extraction of DNA and RNA from Clinical Samples using TruTip Technology on Common Liquid Handling Robots

Published on: June 11, 2013

Area of Science:

  • Biotechnology
  • Molecular Biology
  • Analytical Chemistry

Background:

  • Accurate gene expression studies and chip technologies require efficient messenger RNA (mRNA) separation from biological samples.
  • Current methods for mRNA isolation can be complex and time-consuming.
  • Leveraging the polyadenine (poly(A)) tail of mRNA offers a target for selective binding and isolation.

Purpose of the Study:

  • To develop and optimize a method for easy, efficient, and low-demand separation and detection of mRNA.
  • To utilize paramagnetic microparticles coated with thymine chains for mRNA capture.
  • To couple this isolation method with sensitive electrochemical detection.

Main Methods:

  • Optimization of cyclic and square wave voltammetry for poly(A) detection, using poly(A) as an mRNA mimic.
  • Development of an automated approach for rinsing and hybridizing nucleic acids to paramagnetic microparticles.
  • Application of optimized conditions for mRNA isolation and subsequent electrochemical analysis.

Main Results:

  • Achieved a detection limit of 1 ng/ml for poly(A) under optimized square wave voltammetry (280 Hz, 200 s accumulation, acetate buffer pH 4.6, 35°C).
  • The automated isolation procedure yielded approximately 75% of poly(A).
  • Successfully applied the method to quantify mRNA in human brain tissues (40-760 µg mRNA/g tissue) and maize root extracts, with six samples processed in under 2.5 hours.

Conclusions:

  • The developed method provides an efficient, automatable, and sensitive approach for mRNA isolation and detection.
  • This technique is suitable for gene expression analysis and applications in chip technologies.
  • The method demonstrates versatility, being effective in analyzing clinical tissue samples and plant extracts.