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Updated: Jun 17, 2026

Characterizing DNA Repair Processes at Transient and Long-lasting Double-strand DNA Breaks by Immunofluorescence Microscopy
Published on: June 8, 2018
Defects in DNA lesion bypass lead to spontaneous chromosomal rearrangements and increased cell death
Kristina H Schmidt1, Emilie B Viebranz, Lorena B Harris
1Department of Cell Biology, Microbiology and Molecular Biology, University of South Florida, Tampa, FL 33620, USA. kschmidt@cas.usf.edu
Abstract:
Rev3 polymerase and Mph1 DNA helicase participate in error-prone and error-free pathways, respectively, for the bypassing of template lesions during DNA replication. Here we have investigated the role of these pathways and their genetic interaction with recombination factors, other nonreplicative DNA helicases, and DNA damage checkpoint components in the maintenance of genome stability, viability, and sensitivity to the DNA-damaging agent methyl methanesulfonate (MMS). We find that cells lacking Rev3 and Mph1 exhibit a synergistic, Srs2-dependent increase in the rate of accumulating spontaneous, gross chromosomal rearrangements, suggesting that the suppression of point mutations by deletion of REV3 may lead to chromosomal rearrangements. While mph1Delta is epistatic to homologous recombination (HR) genes, both Rad51 and Rad52, but not Rad59, are required for normal growth of the rev3Delta mutant and are essential for survival of rev3Delta cells during exposure to MMS, indicating that Mph1 acts in a Rad51-dependent, Rad59-independent subpathway of HR-mediated lesion bypass. Deletion of MPH1 helicase leads to synergistic DNA damage sensitivity increases in cells with chl1Delta or rrm3Delta helicase mutations, whereas mph1Delta is hypostatic to sgs1Delta. Previously reported slow growth of mph1Delta srs2Delta cells is accompanied by G(2)/M arrest and fully suppressed by disruption of the Mec3-dependent DNA damage checkpoint. We propose a model for replication fork rescue mediated by translesion DNA synthesis and homologous recombination that integrates the role of Mph1 in unwinding D loops and its genetic interaction with Rev3 and Srs2-regulated pathways in the suppression of spontaneous genome rearrangements and in mutation avoidance.
Insights
Rev3 polymerase and Mph1 helicase protect genome stability. Their combined deletion synergistically increases chromosomal rearrangements, highlighting complex DNA repair pathways essential for mutation avoidance and MMS resistance.
Area of Science:
- Molecular Biology
- Genetics
- DNA Repair
Background:
- Rev3 polymerase and Mph1 helicase are key players in DNA lesion bypass pathways.
- Understanding their roles is crucial for maintaining genome stability and preventing mutations.
Purpose of the Study:
- Investigate the roles of Rev3 and Mph1 in genome stability.
- Examine their genetic interactions with recombination factors, helicases, and checkpoint proteins.
- Determine their contribution to viability and methyl methanesulfonate (MMS) sensitivity.
Main Methods:
- Genetic analysis of deletion mutants (rev3Δ, mph1Δ) and their combinations.
- Assessment of spontaneous gross chromosomal rearrangements (GCRs).
- Evaluation of sensitivity to methyl methanesulfonate (MMS).
- Analysis of interactions with homologous recombination (HR) genes (Rad51, Rad52, Rad59), other helicases (Chl1, Rrm3, Sgs1), and checkpoint proteins (Mec3).
Main Results:
- Cells lacking both Rev3 and Mph1 show a synergistic increase in GCRs, dependent on Srs2.
- Mph1 acts epistatically to HR genes, but Rad51 and Rad52 are essential for rev3Δ mutant growth and survival during MMS exposure.
- Mph1 functions in a Rad51-dependent, Rad59-independent HR subpathway for lesion bypass.
- mph1Δ exhibits synergistic DNA damage sensitivity with chl1Δ or rrm3Δ mutations, but is hypostatic to sgs1Δ.
- mph1Δ srs2Δ slow growth and G2/M arrest are suppressed by disrupting the Mec3-dependent DNA damage checkpoint.
Conclusions:
- The suppression of point mutations by REV3 deletion may lead to chromosomal rearrangements.
- Mph1 plays a critical role in a homologous recombination pathway for DNA lesion bypass.
- A model integrating translesion synthesis and HR explains replication fork rescue, with Mph1 unwinding D-loops and interacting with Rev3 and Srs2 pathways to suppress genome instability.
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