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Updated: Jun 1, 2026

Nonradioactive Assay to Measure Polynucleotide Phosphorylation of Small Nucleotide Substrates
Published on: May 8, 2020
Nanoparticle-based indicator-displacement assay for pyrophosphate
Dong Ju Oh1, Kyung Mi Kim, Kyo Han Ahn
1Department of Chemistry and Center for Electro-Photo Behaviors in Advanced Molecular Systems, Pohang University of Science and Technology (POSTECH), San 31 Hyoja-dong, Pohang 790-784, Republic of Korea.
Abstract:
Silica nanoparticles functionalized with a Zn(II) -dipicolylamine derivative are used as the receptor component of a sensing ensemble for an indicator-displacement assay. The nano-ensemble system, constructed with pyrocatechol violet as an indicator, selectively senses pyrophosphate over other anions including hydrogen phosphate, thus showing a visible blue-to-yellow color change and the corresponding absorption spectral changes in a buffer solution of pH 7. A distinct recognition behavior--the nano-ensemble does not sense hydrogen phosphate that was sensed by the traditional ensemble with the same molecular receptor--is explained by an incomplete-displacement model in the case of the integrated receptor system. The present work demonstrates that the nanoparticle-based competition assay is as effective as the traditional approach with molecular receptors. Furthermore, such an integrated receptor system can provide distinct recognition behavior from its molecular receptor.

